Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CABTHER_RS07035 Genome accession   NC_016024
Coordinates   1698513..1699901 (-) Length   462 a.a.
NCBI ID   WP_014099918.1    Uniprot ID   G2LHB8
Organism   Chloracidobacterium thermophilum B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1693513..1704901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CABTHER_RS17420 (Cabther_A1425) - 1694025..1694786 (+) 762 WP_041569127.1 peptidoglycan-binding domain-containing protein -
  CABTHER_RS07015 (Cabther_A1426) - 1694830..1695756 (-) 927 WP_014099914.1 YihY/virulence factor BrkB family protein -
  CABTHER_RS07020 (Cabther_A1427) - 1695786..1697075 (-) 1290 WP_014099915.1 glucose-1-phosphate adenylyltransferase -
  CABTHER_RS07025 (Cabther_A1428) - 1697163..1697573 (-) 411 WP_014099916.1 hypothetical protein -
  CABTHER_RS07030 (Cabther_A1429) - 1697778..1698428 (-) 651 WP_041569128.1 CvpA family protein -
  CABTHER_RS07035 (Cabther_A1430) radA 1698513..1699901 (-) 1389 WP_014099918.1 DNA repair protein RadA Machinery gene
  CABTHER_RS07040 (Cabther_A1432) queA 1699999..1701042 (+) 1044 WP_014099920.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CABTHER_RS07045 (Cabther_A1433) - 1701142..1703937 (+) 2796 WP_014099921.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48942.34 Da        Isoelectric Point: 5.9604

>NTDB_id=42505 CABTHER_RS07035 WP_014099918.1 1698513..1699901(-) (radA) [Chloracidobacterium thermophilum B]
MPKEKTVYTCQQCGYQSRKWLGRCPDCGAWNSLVEEREDSTLSAAALARGLGGASGKGAKAKIAPTRYEQVPSQDDARLS
SGIAELDRVLGGGIVPGSLLLIGGDPGIGKSTLLLQMAAGLSAAGERVLYVSGEESERQIKLRGDRLGLRPGDLHLLPET
CLERVWEVVTDLKPTLIVVDSVQTAYSERLDSAPGSVSQVRETAGQCLLIAKQQGIPIFLIGHVTKDGVLAGPKTLEHIV
DTVIYFEGERHHNHRLIRATKNRFGATNELGLFEMTGAGLVPVSNPSALFLEQRPVGVAGSVVVACMEGTRPMLVELQAL
VSSSKYGTGRRTVEGVEPNRVALLIAMLEKRAGLHMLGDDVFVNVAGGLTLAEPAADLGIVAALASSFRNTAVDPTTVVF
GEVGLAGEVRATSQPAMRLREVAAMGFARVVMPAGNVPGLEWPDGLEVIGVRSVLEALDVLF

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=42505 CABTHER_RS07035 WP_014099918.1 1698513..1699901(-) (radA) [Chloracidobacterium thermophilum B]
ATGCCGAAAGAAAAAACCGTTTACACCTGCCAGCAGTGTGGCTACCAGAGCCGAAAGTGGCTGGGGCGCTGCCCGGACTG
TGGTGCGTGGAACTCGCTGGTCGAGGAACGCGAAGACAGCACGCTTTCGGCGGCGGCGCTGGCGCGTGGGCTGGGCGGGG
CGTCCGGCAAAGGCGCAAAGGCAAAAATTGCGCCGACGCGCTACGAGCAGGTTCCGAGCCAGGATGACGCGCGCCTTTCC
TCCGGCATCGCCGAGCTGGACCGTGTTTTGGGCGGTGGCATTGTGCCGGGGAGCCTGCTCCTCATCGGCGGCGACCCGGG
CATTGGCAAATCCACGCTGCTGCTTCAGATGGCCGCCGGTTTGAGCGCCGCCGGGGAACGGGTGCTCTACGTCAGCGGGG
AAGAATCCGAGCGGCAGATCAAGCTGCGGGGCGACCGGCTGGGCCTGCGTCCGGGCGACCTGCACCTGTTGCCGGAAACC
TGTCTGGAGCGCGTGTGGGAGGTGGTCACGGACCTCAAACCGACGCTCATCGTGGTGGATTCCGTACAAACGGCCTACTC
CGAACGGCTGGACAGTGCACCGGGCAGTGTTTCCCAGGTGCGCGAAACCGCCGGGCAGTGCCTGCTGATTGCCAAGCAGC
AGGGCATTCCCATTTTTCTCATCGGGCACGTCACCAAGGATGGCGTTCTGGCCGGGCCGAAGACGCTCGAACACATTGTG
GATACCGTCATCTACTTCGAGGGGGAGCGCCACCATAACCACCGCCTCATTCGTGCGACCAAAAACCGTTTTGGTGCCAC
CAACGAACTCGGTCTGTTTGAGATGACCGGCGCGGGACTTGTGCCGGTGAGCAATCCGTCGGCGCTGTTTCTGGAGCAGC
GTCCGGTTGGCGTGGCCGGGTCGGTCGTCGTGGCCTGCATGGAAGGCACGCGCCCGATGCTGGTGGAGTTGCAGGCGCTG
GTCAGCAGCAGCAAATACGGGACAGGGCGGCGGACGGTCGAAGGCGTCGAACCCAACCGCGTGGCGTTGCTCATTGCCAT
GCTCGAAAAACGGGCCGGGCTGCACATGCTGGGTGATGATGTGTTTGTCAACGTGGCTGGCGGATTGACGCTGGCCGAGC
CGGCGGCGGACCTGGGCATCGTGGCGGCCCTGGCGTCCAGCTTTCGGAACACGGCGGTTGATCCGACGACGGTCGTCTTT
GGGGAAGTCGGCCTGGCGGGTGAGGTGCGTGCCACCAGCCAGCCGGCTATGCGGCTCCGGGAAGTCGCCGCCATGGGCTT
TGCGCGGGTGGTGATGCCGGCGGGAAATGTGCCAGGTCTGGAATGGCCGGACGGATTGGAGGTCATTGGCGTCCGGTCGG
TTCTGGAGGCGCTCGATGTCCTGTTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2LHB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.402

99.134

0.519
  radA Streptococcus pneumoniae Rx1

48.268

100

0.483
  radA Streptococcus pneumoniae D39

48.268

100

0.483
  radA Streptococcus pneumoniae R6

48.268

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.268

100

0.483
  radA Streptococcus mitis NCTC 12261

48.268

100

0.483
  radA Streptococcus mitis SK321

48.268

100

0.483

Multiple sequence alignment