Detailed information NTG0425030

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IHN48_RS13970
• Genome accession: NZ_CP062247
• Coordinates: 2861121..2862113 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain AML002_ev03
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2856121..2867113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHN48_RS13950	otnK	2856897..2858063 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
IHN48_RS13955	ygbL	2858155..2858793 (+)	639	WP_001278994.1	aldolase	-
IHN48_RS13960	ygbM	2858798..2859574 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IHN48_RS13965	ygbN	2859663..2861027 (+)	1365	WP_000104441.1	GntP family transporter	-
IHN48_RS13970	rpoS	2861121..2862113 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
IHN48_RS13975	nlpD	2862176..2863270 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IHN48_RS13980	pcm	2863455..2864081 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IHN48_RS13985	surE	2864075..2864836 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IHN48_RS13990	truD	2864817..2865866 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IHN48_RS13995	ispF	2865863..2866342 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IHN48_RS14000	ispD	2866342..2867052 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=425030 IHN48_RS13970 WP_000081588.1 2861121..2862113(-) (rpoS) [Escherichia coli strain AML002_ev03]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=425030 IHN48_RS13970 WP_000081588.1 2861121..2862113(-) (rpoS) [Escherichia coli strain AML002_ev03]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715