Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SBC1_RS01825 Genome accession   NZ_CP049156
Coordinates   406842..408368 (-) Length   508 a.a.
NCBI ID   WP_165086021.1    Uniprot ID   A0A6G8NFG9
Organism   Caballeronia sp. SBC1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401842..413368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC1_RS01800 (SBC1_03670) - 402577..403209 (-) 633 WP_165086013.1 LON peptidase substrate-binding domain-containing protein -
  SBC1_RS01805 (SBC1_03680) rapZ 403244..404140 (-) 897 WP_165086015.1 RNase adapter RapZ -
  SBC1_RS01810 (SBC1_03690) hprK 404234..405202 (-) 969 WP_047895605.1 HPr(Ser) kinase/phosphatase -
  SBC1_RS01815 (SBC1_03700) ptsN 405401..405892 (-) 492 WP_165086018.1 PTS IIA-like nitrogen regulatory protein PtsN -
  SBC1_RS01820 (SBC1_03710) hpf 406310..406669 (-) 360 WP_031357598.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SBC1_RS01825 (SBC1_03720) rpoN/rpoN1 406842..408368 (-) 1527 WP_165086021.1 RNA polymerase factor sigma-54 Machinery gene
  SBC1_RS01830 (SBC1_03730) lptB 408533..409300 (-) 768 WP_165093015.1 LPS export ABC transporter ATP-binding protein -
  SBC1_RS01835 (SBC1_03740) lptA 409312..410010 (-) 699 WP_165086024.1 lipopolysaccharide transport periplasmic protein LptA -
  SBC1_RS01840 (SBC1_03750) lptC 410059..410658 (-) 600 WP_165086027.1 LPS export ABC transporter periplasmic protein LptC -
  SBC1_RS01845 (SBC1_03760) - 410664..411227 (-) 564 WP_165086030.1 HAD family hydrolase -
  SBC1_RS01850 (SBC1_03770) kdsD 411227..412210 (-) 984 WP_165086032.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55923.11 Da        Isoelectric Point: 5.0793

>NTDB_id=425026 SBC1_RS01825 WP_165086021.1 406842..408368(-) (rpoN/rpoN1) [Caballeronia sp. SBC1]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENEDDWTTSPLRVAADGSLITSAGASVNAPDSM
MSNGTSSSSSTSTTDRSENGEPQGVDEYNGMSSSDNGPDSSSWNLEDYGRSNSGSDDDDLPPLQIHESTTTLRDHLASQL
RMTKANQRDRALITFLIESLDEDGYLTSSLEEVKADLPDELEVDVDELSAALALLQSFDPPGVGGRSASECLKLQLLRLE
PTPIRTLALDIVMHHLELLAARDFTRLRKQLKASDDALRDAHLLIRSLEPFPGAVFGKSEADYVVPDILVRKMSSGWTAE
LNPEIVPRLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLR
EIADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDSKSPLSDSRIAELLAE
QGFVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=425026 SBC1_RS01825 WP_165086021.1 406842..408368(-) (rpoN/rpoN1) [Caballeronia sp. SBC1]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCATCTTGCGCTGACCCCACAACTGCAGCAGTCCATCCGGCTGCTGCA
GCTGTCGACGCTTGAGTTGCAGCAGGAAGTCGCGATGGCTGTCGCGCAAAATCCGCTGCTCGAGAACGAGGACGACTGGA
CCACCAGCCCGCTACGCGTGGCGGCGGACGGCTCGCTGATCACCTCGGCGGGGGCATCGGTGAACGCACCCGATTCCATG
ATGAGCAACGGCACGTCGTCGAGCAGCAGCACGAGCACGACTGACCGTTCCGAAAACGGTGAGCCCCAGGGCGTAGACGA
ATACAACGGCATGAGTTCGTCGGACAACGGACCGGATTCGAGCTCGTGGAATCTGGAAGATTACGGCCGCTCGAATAGCG
GTTCGGACGACGACGACCTGCCGCCGCTGCAAATCCACGAATCCACCACTACCCTGCGCGATCACCTGGCGTCGCAACTG
CGCATGACGAAGGCGAATCAGCGCGACCGTGCGCTGATCACATTCCTGATCGAATCGCTCGATGAAGACGGTTACCTCAC
GTCGTCGCTCGAGGAAGTGAAGGCGGATCTGCCGGATGAACTGGAAGTCGATGTCGACGAACTGAGCGCGGCGCTCGCGT
TGCTGCAGAGTTTCGATCCGCCGGGAGTGGGCGGCCGTTCGGCATCCGAATGCCTGAAGCTGCAGTTGTTACGGCTTGAA
CCAACGCCTATTCGTACCCTGGCGCTCGATATTGTGATGCACCATCTGGAACTGCTCGCGGCACGCGATTTCACGCGTTT
GCGCAAGCAGCTCAAAGCCTCGGACGACGCACTGCGCGACGCCCATTTGCTGATCCGCTCTCTGGAACCGTTCCCCGGCG
CCGTGTTCGGAAAGAGCGAAGCTGACTACGTCGTTCCTGACATCCTGGTGCGCAAGATGTCCAGCGGCTGGACGGCAGAA
TTGAATCCGGAAATCGTGCCAAGGCTTCGCATCAATCACCTCTACGCGAATATTTTGCGCAACAATCGCGGCGACCCGGG
CAGTGGTTCGTTGCGTCAGCAGCTGCAGGAAGCGCGCTGGCTGATCAAGAATATTCAACAAAGATTCGAGACGATTCTTC
GCGTTGCGCAGGCCATTGTGGAGCGTCAAAAGAACTTTTTTGCGCATGGCGAAATTGCAATGCGGCCCTTGGTTTTGAGG
GAGATTGCTGATACGCTGGGTTTACACGAATCCACTGTCTCACGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGG
GACGCTGGAATTTAAGTACTTCTTCGGATCGCACGTTTCAACCGACACGGGTGGCGCGGCATCGTCCACGGCGATCCGGG
CACTCATCAAGCAACTGATAGGAGCCGAAGACTCAAAATCTCCTCTTTCAGACAGCCGCATCGCAGAGTTGCTGGCAGAA
CAGGGATTCGTGGTCGCGCGCCGTACGGTCGCCAAATATCGCGAAGCTCTGAAAATTCCGGCAGTGAACTTGCGAAAGTC
TCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(351-506)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(145-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8NFG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

65.226

100

0.654