Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SBC1_RS01730 Genome accession   NZ_CP049156
Coordinates   389552..390616 (-) Length   354 a.a.
NCBI ID   WP_370469599.1    Uniprot ID   -
Organism   Caballeronia sp. SBC1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384552..395616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC1_RS01710 (SBC1_03490) ybiB 386231..387190 (-) 960 WP_165085981.1 DNA-binding protein YbiB -
  SBC1_RS01715 (SBC1_03500) - 387536..388234 (+) 699 WP_165085983.1 fumarylacetoacetate hydrolase family protein -
  SBC1_RS01720 (SBC1_03510) maiA 388256..388900 (+) 645 WP_165085985.1 maleylacetoacetate isomerase -
  SBC1_RS01725 (SBC1_03520) - 388897..389508 (+) 612 WP_165085987.1 LysE/ArgO family amino acid transporter -
  SBC1_RS01730 (SBC1_03530) pilA 389552..390616 (-) 1065 WP_370469599.1 signal recognition particle-docking protein FtsY Machinery gene
  SBC1_RS01735 (SBC1_03540) rsmD 391546..392235 (+) 690 WP_165085990.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SBC1_RS01740 (SBC1_03550) coaD 392396..392899 (+) 504 WP_165085992.1 pantetheine-phosphate adenylyltransferase -
  SBC1_RS01745 (SBC1_03560) - 393023..393280 (+) 258 WP_165085994.1 YfhL family 4Fe-4S dicluster ferredoxin -
  SBC1_RS01750 (SBC1_03570) hisC 393327..394391 (-) 1065 WP_165987077.1 histidinol-phosphate transaminase -
  SBC1_RS01755 (SBC1_03580) pth 394470..395072 (-) 603 WP_062090360.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37803.59 Da        Isoelectric Point: 6.7505

>NTDB_id=425025 SBC1_RS01730 WP_370469599.1 389552..390616(-) (pilA) [Caballeronia sp. SBC1]
MTQAPPASAIPLPASPAAATTPEAKPYWQGRTASQWKAPAETVVIVPPPEPEPNAKRSWLTRLKTGLSKTSSGLTGIFIG
AKIDEDLYEELETALLMSDAGVDATEYLLEALREKVRSERLTDSMQVKAALRSLLADLLRPLEKSLMLGRAQPLVMMIAG
VNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLTVWGQRNNVTVVSQESGDAAAVIFDAVGAARARKIDVMMA
DTAGRLPTQLHLMEELRKVKRVIAKAQPDAPHEVLLVIDANTGQNALAQVKSFDDALGLTGLIVTKLDGTAKGGILAAIA
RQRPIPVYFIGVGEKVEDLQPFSADEFADALLGS

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=425025 SBC1_RS01730 WP_370469599.1 389552..390616(-) (pilA) [Caballeronia sp. SBC1]
CTGACGCAAGCCCCGCCTGCGAGCGCAATACCCCTTCCGGCGAGCCCCGCCGCAGCCACCACGCCAGAAGCCAAACCCTA
CTGGCAGGGCCGCACGGCATCGCAATGGAAGGCGCCGGCAGAAACCGTCGTGATCGTGCCGCCGCCGGAACCCGAACCGA
ACGCGAAGCGTTCGTGGCTCACGCGGCTGAAAACCGGGCTATCGAAGACCAGTTCGGGCCTGACGGGGATTTTCATCGGC
GCAAAGATCGATGAGGATTTGTATGAGGAACTTGAAACAGCGCTGCTGATGTCGGATGCCGGTGTCGATGCCACCGAGTA
TCTGCTTGAAGCGCTGCGTGAAAAAGTACGCAGCGAACGGCTTACCGATTCGATGCAGGTCAAGGCCGCACTGCGCTCGC
TGCTCGCAGACCTGCTGCGGCCACTCGAGAAGTCGCTGATGCTCGGTCGCGCCCAACCGCTCGTGATGATGATCGCTGGC
GTGAACGGCGCGGGCAAGACCACGAGCATTGGCAAGCTGGCCAAGCATTTGCAGCGCTTCGACCAGTCCGTGCTGCTCGC
CGCCGGCGACACCTTCCGTGCTGCCGCACGCGAACAGCTCACGGTATGGGGACAACGCAACAACGTGACGGTGGTATCGC
AGGAAAGCGGCGATGCAGCCGCCGTGATCTTCGATGCGGTCGGCGCCGCGCGTGCCCGCAAGATCGACGTGATGATGGCC
GACACAGCGGGCCGCCTGCCCACACAGCTTCATTTGATGGAAGAACTGCGCAAGGTGAAGCGCGTGATCGCAAAGGCGCA
GCCCGACGCGCCGCACGAAGTGCTGCTGGTTATCGACGCAAACACGGGCCAGAACGCGCTCGCCCAAGTGAAGTCTTTCG
ACGATGCGCTGGGCTTGACGGGTTTGATCGTGACCAAGCTCGACGGTACGGCGAAGGGCGGTATTCTCGCGGCCATTGCG
CGGCAGCGGCCGATCCCGGTGTACTTCATTGGCGTGGGCGAGAAAGTCGAGGACTTACAGCCGTTCAGCGCCGACGAATT
CGCGGACGCGTTGCTCGGAAGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(72-133)

SRP54-type protein, GTPase domain (SRP54)

(154-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.907

85.311

0.545