Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSH112_RS06745 Genome accession   NC_017741
Coordinates   1384402..1385715 (-) Length   437 a.a.
NCBI ID   WP_000653541.1    Uniprot ID   -
Organism   Helicobacter pylori Shi112     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379402..1390715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH112_RS06715 (HPSH112_06795) nadC 1379865..1380686 (-) 822 WP_000404041.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPSH112_RS06720 (HPSH112_06800) nadA 1380686..1381696 (-) 1011 WP_001141821.1 quinolinate synthase NadA -
  HPSH112_RS06725 (HPSH112_06805) - 1381686..1382489 (-) 804 WP_000968158.1 phosphatidylserine decarboxylase -
  HPSH112_RS06730 (HPSH112_06810) - 1382486..1382989 (-) 504 WP_000953078.1 DUF6115 domain-containing protein -
  HPSH112_RS06735 (HPSH112_06815) - 1383002..1383496 (-) 495 WP_000544982.1 hypothetical protein -
  HPSH112_RS06740 (HPSH112_06820) mqnP 1383489..1384373 (-) 885 WP_000913959.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSH112_RS06745 (HPSH112_06825) comEC/comE3 1384402..1385715 (-) 1314 WP_000653541.1 ComEC/Rec2 family competence protein Machinery gene
  HPSH112_RS06750 (HPSH112_06830) - 1385712..1387178 (-) 1467 WP_000349785.1 replicative DNA helicase -
  HPSH112_RS06755 (HPSH112_06835) - 1387189..1388583 (-) 1395 WP_000938197.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSH112_RS06760 (HPSH112_06840) crdS 1388586..1389788 (-) 1203 WP_080024726.1 copper-sensing histidine kinase CrdS -
  HPSH112_RS06765 (HPSH112_06845) crdR 1389754..1390395 (-) 642 WP_001169800.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50241.31 Da        Isoelectric Point: 9.9068

>NTDB_id=42497 HPSH112_RS06745 WP_000653541.1 1384402..1385715(-) (comEC/comE3) [Helicobacter pylori Shi112]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRGFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTIFVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=42497 HPSH112_RS06745 WP_000653541.1 1384402..1385715(-) (comEC/comE3) [Helicobacter pylori Shi112]
TTGAAGGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCAAAAGAATACTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTGGAGTCTATGAAATCATGCTTTTTCCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCGGCTTCATTGATAGCGCTCATTCAAGCACTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AACAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment