Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   G5B91_RS22555 Genome accession   NZ_CP049140
Coordinates   4731714..4732877 (-) Length   387 a.a.
NCBI ID   WP_037007712.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain HBP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4726714..4737877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B91_RS22545 (G5B91_22480) - 4727556..4730441 (-) 2886 WP_038803624.1 FimV/HubP family polar landmark protein -
  G5B91_RS22550 (G5B91_22485) - 4730609..4731619 (-) 1011 WP_024766918.1 aspartate-semialdehyde dehydrogenase -
  G5B91_RS22555 (G5B91_22490) fimV 4731714..4732877 (-) 1164 WP_037007712.1 type IV pilus assembly protein FimV Machinery gene
  G5B91_RS22560 (G5B91_22495) asd 4733135..4734247 (-) 1113 WP_024766916.1 aspartate-semialdehyde dehydrogenase -
  G5B91_RS22565 (G5B91_22500) leuB 4734328..4735410 (-) 1083 WP_024766915.1 3-isopropylmalate dehydrogenase -
  G5B91_RS22570 (G5B91_22505) - 4735498..4736262 (-) 765 WP_024766914.1 class I SAM-dependent methyltransferase -
  G5B91_RS22575 (G5B91_22510) leuD 4736298..4736942 (-) 645 WP_024766913.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41552.85 Da        Isoelectric Point: 9.3815

>NTDB_id=424925 G5B91_RS22555 WP_037007712.1 4731714..4732877(-) (fimV) [Pseudomonas nitroreducens strain HBP1]
MARLHRLWLATAVAAAFLPGMAGALELGDISSRAALGQNLSANIDLRGAADMSSEDVVVSLASAEDFERLGVDRNVVTSG
LKFTPDIGKNGRGVIHVSSNRPIREPYVNFVLQVVWPQGRLVREFTLLLDPPSYVASPVTPPAIAPVAAVRAPQAQPLTP
SVANAPTDSYRIQRNDALWDIASRNRPSGSVSVMQTMAAMQRMNPDAFVDGNINRLKVGQVLRLPSEQQVREQSHAQAVA
HVETQNSQWKAKRNPQLAQQERQLDATHKAEAGSAPAKAEERDNLRLVSGQPGKDKGKVEAEQLAVAQEGLDSARREGEE
LRSRISDLESQTQKLNKLIELKDSQIAGLIARLAEQDRAKAQAASPAGNPQASAGLTAQAAGGEPRP

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=424925 G5B91_RS22555 WP_037007712.1 4731714..4732877(-) (fimV) [Pseudomonas nitroreducens strain HBP1]
ATGGCTCGGTTACACAGATTGTGGTTGGCAACGGCGGTGGCGGCGGCTTTCCTGCCGGGCATGGCGGGCGCCCTTGAGCT
GGGCGACATATCCTCGCGGGCGGCGCTGGGGCAGAACCTTTCGGCCAATATCGATCTGCGCGGTGCGGCTGACATGAGCT
CCGAAGACGTCGTGGTGAGCCTGGCCTCGGCCGAGGACTTCGAGCGCCTCGGGGTGGACCGCAACGTGGTCACCAGCGGG
CTGAAATTCACCCCTGATATCGGCAAGAACGGCCGTGGCGTCATTCATGTCAGCTCGAACAGGCCGATTCGCGAGCCGTA
CGTGAACTTTGTCCTGCAGGTCGTGTGGCCGCAGGGGCGCCTGGTTCGTGAGTTCACCCTGTTGCTGGATCCGCCGTCCT
ATGTAGCCAGCCCCGTGACGCCGCCGGCCATTGCGCCGGTTGCTGCCGTCCGCGCGCCGCAAGCGCAACCGTTGACGCCT
TCTGTGGCCAATGCGCCGACTGACAGCTATCGCATCCAGCGCAACGACGCGCTGTGGGACATCGCCTCGCGCAATCGCCC
ATCCGGAAGCGTCTCGGTCATGCAGACCATGGCGGCGATGCAGCGGATGAACCCCGATGCCTTCGTCGACGGCAATATCA
ATCGCCTGAAGGTCGGCCAGGTACTGCGTCTGCCCAGCGAGCAACAGGTTCGCGAGCAGAGCCATGCCCAGGCAGTGGCC
CACGTGGAAACCCAGAATTCGCAGTGGAAGGCCAAGCGCAATCCGCAACTGGCGCAGCAGGAGCGCCAACTGGACGCGAC
CCACAAGGCCGAGGCGGGCAGTGCGCCGGCGAAGGCCGAAGAGCGCGACAACCTGCGCCTGGTCTCCGGTCAGCCGGGTA
AAGATAAAGGCAAGGTGGAGGCCGAGCAGTTGGCCGTTGCCCAGGAAGGCCTGGACAGCGCACGCCGCGAAGGCGAGGAG
CTGCGCAGCCGGATTTCCGACCTGGAAAGCCAGACCCAGAAGTTGAACAAGCTGATCGAGCTGAAAGACTCGCAGATCGC
CGGCCTGATCGCGCGACTGGCCGAGCAGGATCGCGCCAAGGCCCAGGCCGCCTCGCCAGCCGGCAATCCCCAGGCATCGG
CAGGGTTGACCGCTCAGGCCGCCGGGGGCGAGCCGCGCCCCTGA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(170-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

49.471

97.674

0.483