Detailed information NTG0424900

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: G5S34_RS22295
• Genome accession: NZ_CP049139
• Coordinates: 4898339..4899532 (+)
• Length: 397 a.a.
• NCBI ID: WP_182993098.1
• Uniprot ID: -
• Organism: Herbaspirillum frisingense strain IAC152
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4893339..4904532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5S34_RS22270 (G5S34_22205)	coaD	4893506..4893988 (-)	483	WP_006461533.1	pantetheine-phosphate adenylyltransferase	-
G5S34_RS22275 (G5S34_22210)	rsmD	4894025..4894687 (-)	663	WP_182993095.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
G5S34_RS22280 (G5S34_22215)	-	4894718..4896052 (-)	1335	WP_182993096.1	M16 family metallopeptidase	-
G5S34_RS22285 (G5S34_22220)	-	4896079..4896735 (-)	657	WP_102663729.1	ParA family protein	-
G5S34_RS22290 (G5S34_22225)	-	4896791..4898170 (-)	1380	WP_182993097.1	M16 family metallopeptidase	-
G5S34_RS22295 (G5S34_22230)	pilA	4898339..4899532 (+)	1194	WP_182993098.1	signal recognition particle-docking protein FtsY	Machinery gene
G5S34_RS22300 (G5S34_22235)	-	4899537..4900229 (+)	693	WP_006461527.1	cell division ATP-binding protein FtsE	-
G5S34_RS22305 (G5S34_22240)	ftsX	4900226..4901149 (+)	924	WP_182993099.1	permease-like cell division protein FtsX	-
G5S34_RS22310 (G5S34_22245)	rpoH	4901692..4902591 (+)	900	WP_182993100.1	RNA polymerase sigma factor RpoH	-
G5S34_RS22315 (G5S34_22250)	-	4902682..4903272 (-)	591	WP_077236082.1	SCO family protein	-
G5S34_RS22320 (G5S34_22255)	cyoE	4903277..4904170 (-)	894	WP_006461523.1	heme o synthase	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 41772.23 Da
• Isoelectric Point: 5.2978

>NTDB_id=424900 G5S34_RS22295 WP_182993098.1 4898339..4899532(+) (pilA) [Herbaspirillum frisingense strain IAC152]
MFSFFKRKPKPEAQPALPPQPEAAPQPAPTPVEPVPAAPVSPAAPVAPAPTVSAPAVAPVAAPTVAPAPPVLPEAVAPVE
DAAEEEAEIVAAPEPEPEVKRSWLSRLKAGLSKTSSNLTTLFVGARIDDDLYEELESALLVSDAGVEATQWLLDELKKKV
KAERLTEAAQVRTALRTLLIDLLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAA
REQLAVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIAKAMSSAPHEVLL
VIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNATEFVDALLS

Nucleotide

• Length: 1194 bp

>NTDB_id=424900 G5S34_RS22295 WP_182993098.1 4898339..4899532(+) (pilA) [Herbaspirillum frisingense strain IAC152]
ATGTTCAGTTTCTTCAAGAGAAAACCCAAACCGGAAGCGCAGCCCGCGCTGCCACCCCAGCCCGAAGCGGCGCCGCAGCC
GGCTCCCACTCCGGTAGAGCCCGTACCGGCAGCCCCCGTCTCACCTGCTGCTCCCGTTGCACCCGCGCCGACGGTGTCTG
CGCCCGCAGTCGCGCCGGTAGCGGCGCCTACCGTGGCCCCTGCGCCGCCAGTGCTGCCCGAGGCAGTGGCCCCCGTCGAG
GATGCTGCCGAGGAAGAAGCCGAGATCGTCGCCGCGCCCGAGCCGGAACCGGAGGTCAAGCGTTCCTGGCTGTCGCGCCT
GAAGGCGGGGCTGTCCAAGACGTCCAGCAACCTCACCACCCTGTTCGTGGGAGCGCGCATCGATGACGATCTCTACGAAG
AACTGGAATCGGCACTGCTGGTGTCGGACGCTGGTGTCGAGGCCACCCAGTGGCTGCTGGACGAACTGAAGAAGAAGGTC
AAGGCCGAGCGCCTGACCGAAGCCGCCCAGGTGCGTACTGCCTTGCGCACGCTGCTGATCGACCTGCTGCAACCGCTGCA
GCGCCCACTGGTGCTGGGCCGCGACAAACCGCTGGTGATGATGATCGCCGGCGTCAACGGTGCTGGCAAGACCACGACCA
TCGGCAAGCTGGCCTTGCACCTGCAGGCCCATGGGCAGTCGGTACTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCC
CGCGAGCAGCTGGCGGTCTGGGGCGAGCGCAACAATGTGCAGGTGATCGCGCAGGAATCCGGTGATCCGGCTGCGGTGGC
GTATGACTCGGTGCATTCGGCGCAGGCGCGCGGTACGCATGTGGTGATGGTCGATACCGCCGGCCGCCTGCCCACGCAAT
TGCACCTGATGGATGAACTCAAGAAGATCAAGCGGGTCATTGCCAAGGCGATGAGCTCGGCGCCCCATGAAGTGCTGCTG
GTCATCGACGGCAACACCGGCCAGAATGCGCTGGCCCAGGTCAAGGCCTTCGATGATGCGCTGGGGCTGACCGGCCTGGT
GGTGACCAAGCTGGACGGCACCGCCAAGGGCGGTATCCTGGCCGCCATCGCCAAGACCCGCCCGGTGCCGCTGTATTTCA
TCGGCGTGGGCGAGAAGATCGAAGACCTGCAACCATTCAACGCCACCGAATTCGTCGATGCCCTCCTGAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (198-396)

• SRP54-type protein, helical bundle domain (SRP54_N) (117-176)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.381	100	0.554