Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPSH112_RS02985 Genome accession   NC_017741
Coordinates   603376..604896 (+) Length   506 a.a.
NCBI ID   WP_000611097.1    Uniprot ID   -
Organism   Helicobacter pylori Shi112     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 598376..609896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH112_RS02955 (HPSH112_03015) moaC 598525..599001 (+) 477 WP_001131556.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPSH112_RS02960 (HPSH112_03020) hpaA 599121..599903 (+) 783 WP_000646687.1 flagellar sheath lipoprotein HpaA -
  HPSH112_RS02965 (HPSH112_03025) - 599929..600765 (+) 837 WP_001037762.1 outer membrane protein -
  HPSH112_RS02970 (HPSH112_03030) tig 600878..602233 (+) 1356 WP_001047726.1 trigger factor -
  HPSH112_RS02975 (HPSH112_03035) clpP 602254..602841 (+) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPSH112_RS02980 (HPSH112_03040) def 602846..603373 (+) 528 WP_001185887.1 peptide deformylase -
  HPSH112_RS02985 (HPSH112_03045) comM 603376..604896 (+) 1521 WP_000611097.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPSH112_RS02990 (HPSH112_03050) - 604921..606981 (+) 2061 WP_001158823.1 heavy metal translocating P-type ATPase -
  HPSH112_RS02995 (HPSH112_03055) - 607017..608231 (+) 1215 WP_000548888.1 restriction endonuclease subunit S -
  HPSH112_RS03000 (HPSH112_03060) hofF 608391..609890 (-) 1500 WP_001108269.1 outer membrane beta-barrel protein HofF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57205.21 Da        Isoelectric Point: 8.3918

>NTDB_id=42490 HPSH112_RS02985 WP_000611097.1 603376..604896(+) (comM) [Helicobacter pylori Shi112]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEEPFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEVQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=42490 HPSH112_RS02985 WP_000611097.1 603376..604896(+) (comM) [Helicobacter pylori Shi112]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCAACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCACCTAAGGCCAATGAAGAGCCTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATCAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACGAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTCTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTAGTATTGTTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGTGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
TGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment