Detailed information NTG0424871

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: G5S35_RS01440
• Genome accession: NZ_CP049134
• Coordinates: 306155..307267 (-)
• Length: 370 a.a.
• NCBI ID: WP_110325365.1
• Uniprot ID: -
• Organism: Paraburkholderia tropica strain IAC135
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 301155..312267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5S35_RS01420 (G5S35_01420)	-	302678..302881 (-)	204	WP_065062175.1	hypothetical protein	-
G5S35_RS01425 (G5S35_01425)	ybiB	303273..304235 (-)	963	WP_074981468.1	DNA-binding protein YbiB	-
G5S35_RS01430 (G5S35_01430)	-	304615..305313 (+)	699	WP_110325363.1	fumarylacetoacetate hydrolase family protein	-
G5S35_RS01435 (G5S35_01435)	maiA	305414..306061 (+)	648	WP_065062181.1	maleylacetoacetate isomerase	-
G5S35_RS01440 (G5S35_01440)	pilA	306155..307267 (-)	1113	WP_110325365.1	signal recognition particle-docking protein FtsY	Machinery gene
G5S35_RS01445 (G5S35_01445)	rsmD	307571..308197 (+)	627	WP_183038502.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
G5S35_RS01450 (G5S35_01450)	coaD	308339..308842 (+)	504	WP_065062187.1	pantetheine-phosphate adenylyltransferase	-
G5S35_RS01455 (G5S35_01455)	-	308917..309174 (+)	258	WP_065062189.1	YfhL family 4Fe-4S dicluster ferredoxin	-
G5S35_RS01460 (G5S35_01460)	hisC	309331..310398 (-)	1068	WP_183038503.1	histidinol-phosphate transaminase	-
G5S35_RS01465 (G5S35_01465)	pth	310492..311094 (-)	603	WP_065062191.1	aminoacyl-tRNA hydrolase	-
G5S35_RS01470 (G5S35_01470)	-	311273..311875 (-)	603	WP_065062193.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 39611.41 Da
• Isoelectric Point: 5.3366

>NTDB_id=424871 G5S35_RS01440 WP_110325365.1 306155..307267(-) (pilA) [Paraburkholderia tropica strain IAC135]
MFSFFKRLRGDKNAENEQAETAAPEADAARDEAPAAPRAPAAPAESKAPPAAARTFEAVEIVPPPALDATAKKSWLTRLK
SGLSKTGSNIQSIFVNAKIDDDLYEELETALLMSDAGVDATEYLLETLRQKVRAERLTEAQQVKTALRQLLIDLLKPLEK
SLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLTIWGERNNVTVVQQESGDPAAVIF
DAVNAARARGINVVMADTAGRLPTQLHLMDELKKVKRVIGKAFDGAPHEVLLVIDANTGQNALTQVKSFDDALGLTGLIV
TKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFVAEEFADALLGN

Nucleotide

• Length: 1113 bp

>NTDB_id=424871 G5S35_RS01440 WP_110325365.1 306155..307267(-) (pilA) [Paraburkholderia tropica strain IAC135]
ATGTTCAGTTTCTTCAAACGACTCCGCGGCGACAAGAACGCGGAGAACGAGCAGGCCGAAACCGCCGCTCCCGAGGCCGA
CGCCGCACGCGACGAAGCGCCTGCGGCGCCGCGCGCGCCGGCCGCGCCCGCAGAGTCCAAAGCACCGCCCGCTGCCGCCC
GCACGTTCGAGGCCGTCGAAATCGTCCCGCCGCCCGCGCTCGACGCCACCGCGAAGAAGTCGTGGCTCACGCGCCTGAAG
TCGGGCCTGTCGAAAACGGGTTCGAACATCCAGAGCATCTTCGTCAACGCGAAGATCGACGACGATCTCTACGAGGAGCT
GGAAACCGCGCTGCTGATGTCGGACGCGGGTGTCGACGCCACCGAATATCTGCTCGAAACGCTGCGCCAGAAGGTGCGCG
CCGAACGCCTGACCGAAGCGCAGCAGGTGAAAACCGCGCTGCGTCAGTTGCTGATCGACCTGCTCAAGCCGCTCGAAAAG
TCGCTGATGCTGGGCCGCGCGCAACCGCTCGTCATGATGATCGCGGGCGTGAACGGCGCGGGCAAGACCACCAGCATCGG
CAAGCTCGCCAAGCATCTGCAGAGCTTCGACCAGAGCGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCCGCCGCGCGCG
AGCAGCTCACCATCTGGGGCGAGCGCAACAACGTGACGGTCGTGCAGCAGGAAAGCGGCGACCCGGCCGCAGTGATCTTC
GACGCCGTGAACGCGGCGCGCGCGCGCGGCATCAACGTGGTGATGGCCGACACGGCCGGCCGCCTGCCCACGCAGCTCCA
TCTGATGGATGAGCTCAAGAAGGTCAAGCGCGTGATCGGCAAGGCCTTCGACGGCGCGCCGCACGAAGTGCTGCTCGTGA
TCGACGCGAACACGGGCCAGAATGCACTCACGCAGGTGAAGTCGTTCGATGACGCGCTCGGTCTAACCGGCCTGATCGTC
ACCAAGCTCGACGGCACCGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGCCAGCGCCCGATTCCGGTGTACTTCATCGG
CGTGGGCGAGAAGGTCGAGGATCTGCAGCCGTTCGTGGCCGAAGAATTTGCGGACGCATTGCTCGGCAACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (88-149)

• SRP54-type protein, GTPase domain (SRP54) (170-369)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.017	92.703	0.538