Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BCOA_RS27890 Genome accession   NC_016023
Coordinates   2291293..2292108 (+) Length   271 a.a.
NCBI ID   WP_014097358.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 36D1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2286293..2297108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCOA_RS27870 (Bcoa_2095) trpCF 2286966..2288390 (+) 1425 WP_014097353.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -
  BCOA_RS27875 (Bcoa_2096) trpB 2288368..2289573 (+) 1206 WP_014097354.1 tryptophan synthase subunit beta -
  BCOA_RS35380 - 2289566..2289712 (+) 147 WP_187287742.1 hypothetical protein -
  BCOA_RS27880 (Bcoa_2097) trpA 2289705..2290496 (+) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  BCOA_RS27885 (Bcoa_2098) - 2290755..2290937 (-) 183 WP_014097356.1 YfhD family protein -
  BCOA_RS34705 (Bcoa_2099) - 2291084..2291206 (-) 123 WP_014097357.1 YfhE family protein -
  BCOA_RS27890 (Bcoa_2100) recX 2291293..2292108 (+) 816 WP_014097358.1 recombination regulator RecX Regulator
  BCOA_RS27895 (Bcoa_2101) - 2292089..2292406 (+) 318 WP_014097359.1 YfhH family protein -
  BCOA_RS27915 (Bcoa_2102) mutY 2294185..2295303 (-) 1119 WP_014097360.1 A/G-specific adenine glycosylase -
  BCOA_RS27920 (Bcoa_2103) - 2295482..2296462 (+) 981 WP_014097361.1 metal-dependent hydrolase -
  BCOA_RS27925 (Bcoa_2104) - 2296549..2296707 (+) 159 WP_014097362.1 small, acid-soluble spore protein K -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31496.19 Da        Isoelectric Point: 7.5094

>NTDB_id=42480 BCOA_RS27890 WP_014097358.1 2291293..2292108(+) (recX) [Heyndrickxia coagulans 36D1]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVISKLYELQYLDDAEFAASFVRTQMNTTHKGPVVIRRELQQKGIAPELVKKALEIFDADQQVEH
ALALAEKLSRQHARLSEKLLKQKVEQGLVVKGYPPEVISAAMAALHIEKDEEAEWEALLQHAEKAKRKYGRLSGYAYRQK
MKQFLYRKGFPVDLIDRYLREEEDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=42480 BCOA_RS27890 WP_014097358.1 2291293..2292108(+) (recX) [Heyndrickxia coagulans 36D1]
GTGCCGGTCATTACAAAAATCTCAGTTCAAAAAAATAATAAAGAACGATACAATATTTTTCTTGACGGCCAGTACCGATT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAAGATGATATCCGGAAAGGCGTCAACACCGCTATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTA
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCATCCGGAGTGTCATATCAAAGCTTTATGAATTGCAGTATTT
GGATGATGCGGAATTTGCCGCAAGTTTTGTACGAACACAAATGAATACAACACATAAAGGGCCTGTTGTCATTAGAAGGG
AACTCCAGCAAAAAGGCATTGCACCAGAGCTTGTGAAAAAGGCGCTTGAAATTTTTGATGCGGATCAGCAAGTGGAACAC
GCCCTTGCCCTTGCGGAAAAACTGTCCAGGCAGCATGCCCGGTTGTCAGAGAAGCTTTTAAAGCAAAAAGTGGAGCAGGG
GCTTGTCGTAAAAGGTTATCCACCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATATTGAAAAGGATGAAGAAGCGG
AGTGGGAAGCCCTTCTTCAGCACGCTGAAAAAGCAAAGCGCAAATACGGTAGACTTTCGGGATATGCATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGAGGAGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509

Multiple sequence alignment