Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G5V60_RS15380 Genome accession   NZ_CP049101
Coordinates   3110116..3110745 (-) Length   209 a.a.
NCBI ID   WP_001524444.1    Uniprot ID   -
Organism   Escherichia coli strain EC28     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105116..3115745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5V60_RS15365 (G5V60_15350) helD 3105358..3107412 (-) 2055 WP_001295938.1 DNA helicase IV -
  G5V60_RS15370 (G5V60_15355) yccF 3107535..3107981 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G5V60_RS15375 (G5V60_15360) yccS 3107991..3110153 (+) 2163 WP_001524445.1 YccS family putative transporter -
  G5V60_RS15380 (G5V60_15365) sxy/tfoX 3110116..3110745 (-) 630 WP_001524444.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G5V60_RS15385 (G5V60_15370) sulA 3110964..3111473 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  G5V60_RS15390 (G5V60_15375) ompA 3111829..3112881 (+) 1053 WP_001346420.1 porin OmpA -
  G5V60_RS15395 (G5V60_15380) matP 3112957..3113409 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  G5V60_RS15400 (G5V60_15385) ycbZ 3113595..3115355 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24190.10 Da        Isoelectric Point: 9.0428

>NTDB_id=424761 G5V60_RS15380 WP_001524444.1 3110116..3110745(-) (sxy/tfoX) [Escherichia coli strain EC28]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=424761 G5V60_RS15380 WP_001524444.1 3110116..3110745(-) (sxy/tfoX) [Escherichia coli strain EC28]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99