Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IHN52_RS13265 Genome accession   NZ_CP062243
Coordinates   2729505..2730242 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AML003_ev03     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2724505..2735242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHN52_RS13250 clpC 2724959..2727532 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IHN52_RS13255 yfiH 2727662..2728393 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  IHN52_RS13260 rluD 2728390..2729370 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IHN52_RS13265 comL 2729505..2730242 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IHN52_RS13270 raiA 2730513..2730854 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IHN52_RS13275 pheL 2730958..2731005 (+) 48 WP_010723158.1 phe operon leader peptide -
  IHN52_RS13280 pheA 2731104..2732264 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IHN52_RS13285 tyrA 2732307..2733428 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IHN52_RS13290 aroF 2733439..2734509 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IHN52_RS13295 yfiL 2734719..2735084 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=424697 IHN52_RS13265 WP_000197686.1 2729505..2730242(+) (comL) [Escherichia coli strain AML003_ev03]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=424697 IHN52_RS13265 WP_000197686.1 2729505..2730242(+) (comL) [Escherichia coli strain AML003_ev03]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376