Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BCOA_RS23230 Genome accession   NC_016023
Coordinates   1282239..1283609 (-) Length   456 a.a.
NCBI ID   WP_014096526.1    Uniprot ID   A0A133KUJ2
Organism   Heyndrickxia coagulans 36D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277239..1288609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCOA_RS23205 (Bcoa_1188) gltX 1277568..1279028 (-) 1461 WP_014096522.1 glutamate--tRNA ligase -
  BCOA_RS23215 (Bcoa_1189) ispF 1279581..1280057 (-) 477 WP_014096523.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BCOA_RS23220 (Bcoa_1190) ispD 1280060..1280740 (-) 681 WP_014096524.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BCOA_RS23225 (Bcoa_1191) - 1280807..1281892 (-) 1086 WP_014096525.1 PIN/TRAM domain-containing protein -
  BCOA_RS23230 (Bcoa_1192) radA 1282239..1283609 (-) 1371 WP_014096526.1 DNA repair protein RadA Machinery gene
  BCOA_RS23235 (Bcoa_1194) clpC 1283842..1286292 (-) 2451 WP_014096528.1 ATP-dependent protease ATP-binding subunit ClpC -
  BCOA_RS23240 (Bcoa_1195) - 1286309..1287376 (-) 1068 WP_014096529.1 protein arginine kinase -
  BCOA_RS23245 (Bcoa_1196) - 1287376..1287921 (-) 546 WP_014096530.1 UvrB/UvrC motif-containing protein -
  BCOA_RS23250 (Bcoa_1197) - 1287941..1288405 (-) 465 WP_371836356.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49792.20 Da        Isoelectric Point: 7.1420

>NTDB_id=42468 BCOA_RS23230 WP_014096526.1 1282239..1283609(-) (radA) [Heyndrickxia coagulans 36D1]
MAKKTVKFVCQNCGYESPKWMGKCPQCSQWNQMVEEAETPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQA
IDELNPGFVVIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVSTIQEALEAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=42468 BCOA_RS23230 WP_014096526.1 1282239..1283609(-) (radA) [Heyndrickxia coagulans 36D1]
ATGGCAAAAAAAACCGTAAAGTTTGTTTGCCAGAACTGCGGCTACGAGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAGCCAGTGGAACCAGATGGTGGAGGAAGCGGAGACGCCAAAACGGAGGGGCTTTTTTTTACATCCGGAGCCTGGAAATG
AAACCAAAGCGGCACCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACAAAGGTGGATTTTGGAGAGCTGAACCGT
GTCCTCGGCGGCGGCATTGTTGCCGGATCACTTGTTTTGATCGGCGGGGATCCCGGGATCGGCAAATCAACGCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATTTCCGGGGAGGAATCGGCGAAACAGACGAAGT
TAAGGGCGGACCGGTTAAACATCCATACCGACCATCTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAATCCCGGCTTTGTGGTCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAACGTGGCCATCTTTATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGCCCACGTGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAACGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGTTCGACGAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTGGCTTCCATTGAGGGGACGCGCCCGGTCCTTGTCGAGATCCAGGCGCTGTTGGCCCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGACTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGTCTTTT
GATTCAGAACCAGGATGCTTATTTAAAAGTCGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCTG
TCAGCGTGGCATCCAGTTTTCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAGGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCAGGATTGAGCAGCGCGTCCAGGAAGCGGCAAAACTTGGTTTCCGGCGGGCGATCATCCCGAAAAA
TAATATGGGCGGGTGGACGCCGCCAAAAGAGATTCAAGTGATCGGCGTCTCCACAATCCAGGAAGCTTTGGAAGCGGCAC
TCGGCGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133KUJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.024

100

0.715
  radA Streptococcus mitis NCTC 12261

62.971

98.904

0.623
  radA Streptococcus mitis SK321

62.749

98.904

0.621
  radA Streptococcus pneumoniae Rx1

62.749

98.904

0.621
  radA Streptococcus pneumoniae D39

62.749

98.904

0.621
  radA Streptococcus pneumoniae R6

62.749

98.904

0.621
  radA Streptococcus pneumoniae TIGR4

62.749

98.904

0.621

Multiple sequence alignment