Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   G5C67_RS07575 Genome accession   NZ_CP049089
Coordinates   1548736..1549077 (-) Length   113 a.a.
NCBI ID   WP_021114623.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543736..1554077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS07545 (G5C67_07510) trxA 1544277..1544591 (-) 315 WP_015940165.1 thioredoxin -
  G5C67_RS07550 (G5C67_07515) - 1544888..1545517 (-) 630 WP_015940164.1 LysE family transporter -
  G5C67_RS07555 (G5C67_07520) - 1545519..1545992 (-) 474 WP_164692163.1 phosphatidylglycerophosphatase A -
  G5C67_RS07560 (G5C67_07525) thiL 1545995..1546963 (-) 969 WP_160413801.1 thiamine-phosphate kinase -
  G5C67_RS07565 (G5C67_07530) nusB 1546972..1547385 (-) 414 WP_021112072.1 transcription antitermination factor NusB -
  G5C67_RS07570 (G5C67_07535) comE 1547464..1548726 (-) 1263 WP_160413800.1 type IV pilus secretin PilQ Machinery gene
  G5C67_RS07575 (G5C67_07540) comD 1548736..1549077 (-) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  G5C67_RS07580 (G5C67_07545) comC 1549122..1549652 (-) 531 WP_021119496.1 hypothetical protein Machinery gene
  G5C67_RS07585 (G5C67_07550) comB 1549649..1550170 (-) 522 WP_062923926.1 hypothetical protein Machinery gene
  G5C67_RS07590 (G5C67_07555) comA 1550146..1550823 (-) 678 WP_021113429.1 hypothetical protein Machinery gene
  G5C67_RS07595 (G5C67_07560) - 1550977..1553532 (+) 2556 WP_021119495.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13165.91 Da        Isoelectric Point: 4.8436

>NTDB_id=424652 G5C67_RS07575 WP_021114623.1 1548736..1549077(-) (comD) [Glaesserella parasuis strain vHPS7]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=424652 G5C67_RS07575 WP_021114623.1 1548736..1549077(-) (comD) [Glaesserella parasuis strain vHPS7]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

98.23

100

0.982