Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6P90_RS09180 Genome accession   NZ_CP049081
Coordinates   1894892..1895521 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain p10A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1889892..1900521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6P90_RS09160 (G6P90_09155) ycbZ 1890293..1892053 (-) 1761 WP_000152888.1 Lon protease family protein -
  G6P90_RS09165 (G6P90_09160) matP 1892239..1892691 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G6P90_RS09170 (G6P90_09165) ompA 1892767..1893807 (-) 1041 WP_000750416.1 porin OmpA -
  G6P90_RS09175 (G6P90_09170) sulA 1894164..1894673 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G6P90_RS09180 (G6P90_09175) sxy/tfoX 1894892..1895521 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6P90_RS09185 (G6P90_09180) yccS 1895484..1897646 (-) 2163 WP_000875058.1 YccS family putative transporter -
  G6P90_RS09190 (G6P90_09185) yccF 1897656..1898102 (-) 447 WP_001261235.1 YccF domain-containing protein -
  G6P90_RS09195 (G6P90_09190) helD 1898225..1900279 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=424581 G6P90_RS09180 WP_000839153.1 1894892..1895521(+) (sxy/tfoX) [Escherichia coli strain p10A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=424581 G6P90_RS09180 WP_000839153.1 1894892..1895521(+) (sxy/tfoX) [Escherichia coli strain p10A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1