Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSH169_RS05790 Genome accession   NC_017740
Coordinates   1222917..1223966 (+) Length   349 a.a.
NCBI ID   WP_000115526.1    Uniprot ID   -
Organism   Helicobacter pylori Shi169     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217917..1228966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH169_RS05775 - 1218578..1220309 (+) 1732 Protein_1126 hypothetical protein -
  HPSH169_RS05780 (HPSH169_05910) asd 1220500..1221540 (-) 1041 WP_000860913.1 aspartate-semialdehyde dehydrogenase -
  HPSH169_RS05785 (HPSH169_05915) hisS 1221527..1222855 (-) 1329 WP_000632533.1 histidine--tRNA ligase -
  HPSH169_RS05790 (HPSH169_05920) waaF 1222917..1223966 (+) 1050 WP_000115526.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSH169_RS05795 (HPSH169_05925) - 1224160..1224378 (-) 219 WP_000744171.1 hypothetical protein -
  HPSH169_RS05805 (HPSH169_05935) fusA 1224922..1227000 (-) 2079 WP_000101893.1 elongation factor G -
  HPSH169_RS05810 (HPSH169_05940) rpsG 1227012..1227479 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPSH169_RS05815 (HPSH169_05945) rpsL 1227495..1227902 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39545.41 Da        Isoelectric Point: 9.8130

>NTDB_id=42457 HPSH169_RS05790 WP_000115526.1 1222917..1223966(+) (waaF) [Helicobacter pylori Shi169]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=42457 HPSH169_RS05790 WP_000115526.1 1222917..1223966(+) (waaF) [Helicobacter pylori Shi169]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGACTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAATAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment