Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   G5J76_RS09580 Genome accession   NZ_CP049044
Coordinates   2103882..2104517 (+) Length   211 a.a.
NCBI ID   WP_019827919.1    Uniprot ID   A0A8I1FZ19
Organism   Pseudomonas psychrophila strain KM02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098882..2109517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5J76_RS09570 (G5J76_09545) - 2100854..2101369 (-) 516 WP_019827916.1 DUF2062 domain-containing protein -
  G5J76_RS09575 (G5J76_09550) comA 2101503..2103722 (+) 2220 WP_048350949.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G5J76_RS09580 (G5J76_09555) exbB 2103882..2104517 (+) 636 WP_019827919.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  G5J76_RS09585 (G5J76_09560) - 2104514..2104942 (+) 429 WP_019827920.1 biopolymer transporter ExbD -
  G5J76_RS09590 (G5J76_09565) lpxK 2104942..2105952 (+) 1011 WP_048350948.1 tetraacyldisaccharide 4'-kinase -
  G5J76_RS09595 (G5J76_09570) - 2105978..2106163 (+) 186 WP_019827923.1 Trm112 family protein -
  G5J76_RS09600 (G5J76_09575) kdsB 2106160..2106924 (+) 765 WP_046809896.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  G5J76_RS09605 (G5J76_09580) murB 2106921..2107940 (+) 1020 WP_019827925.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.20 Da        Isoelectric Point: 6.8768

>NTDB_id=424382 G5J76_RS09580 WP_019827919.1 2103882..2104517(+) (exbB) [Pseudomonas psychrophila strain KM02]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKLLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDREVDVVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=424382 G5J76_RS09580 WP_019827919.1 2103882..2104517(+) (exbB) [Pseudomonas psychrophila strain KM02]
GTGTGGGAACTGGTCAAATCAGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
TGAGCGTCTGTGGACCCTGCGTGCCAGTCGCGTAACCCCGGAACATCTGCTCGGACAGGTCTGGGTCTGGATCAAAGACA
AGCAGATGGACAAGGAAAAACTCAAATTACTGCGCGCCGACTCGCCGCTGGGTGAGATTTTGGCAGCGGGTCTGGCCAAC
TCAAAACATGGTCGCGAGATCATGAAAGAGTGTATCGAAGAGGCCGCTGCCCGGGTGATCCACGAACTTGAGCGTTATCT
CAATGCGCTGGGTACGATTGCTGCAATGGCGCCGCTGCTGGGCTTGCTGGGCACCGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACCAATGCTGCCGTGCTGGCGGGCGGTATTTCCAAGGCGTTGATCACCACTGCC
GCCGGTCTGATGGTGGGTATCCCTGCAGTCTTCTTCCATCGCTTCCTGCAACGCCGTGTCGACGAGCTGGTGGTCGGGAT
GGAACAAGAGGCGATCAAGCTGGTTGAGGTGATACAAGGCGACCGTGAAGTCGATGTGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853