Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIV_RS11220 Genome accession   NC_016011
Coordinates   2304931..2306736 (-) Length   601 a.a.
NCBI ID   WP_014093510.1    Uniprot ID   -
Organism   Listeria ivanovii subsp. ivanovii PAM 55     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2299931..2311736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIV_RS11200 (LIV_2171) isdE 2300885..2301757 (-) 873 WP_014093506.1 heme ABC transporter substrate-binding protein IsdE -
  LIV_RS11205 (LIV_2172) - 2301846..2303555 (-) 1710 WP_014093507.1 NEAT domain-containing protein -
  LIV_RS11210 (LIV_2173) isdC 2303568..2304191 (-) 624 WP_014093508.1 heme uptake protein IsdC -
  LIV_RS11215 (LIV_2174) - 2304386..2304658 (-) 273 WP_014093509.1 DUF3116 family protein -
  LIV_RS11220 (LIV_2175) pepF 2304931..2306736 (-) 1806 WP_014093510.1 oligoendopeptidase F Regulator
  LIV_RS11225 (LIV_2176) - 2306811..2307926 (-) 1116 WP_014093511.1 competence protein CoiA family protein -
  LIV_RS11230 (LIV_2177) mecA 2308052..2308705 (-) 654 WP_014093512.1 adaptor protein MecA -
  LIV_RS11235 (LIV_2178) spxA 2308937..2309332 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  LIV_RS11240 (LIV_2179) - 2309652..2310614 (-) 963 WP_014093513.1 ABC transporter ATP-binding protein -
  LIV_RS11245 (LIV_2180) - 2310611..2311687 (-) 1077 WP_014093514.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68547.84 Da        Isoelectric Point: 4.6059

>NTDB_id=42429 LIV_RS11220 WP_014093510.1 2304931..2306736(-) (pepF) [Listeria ivanovii subsp. ivanovii PAM 55]
MSKTNALPLREEVPKELTWDLTTIYPSDEAWEEAFVELQKIAEESTKFKGRLADSSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDETVLKQFVEENPDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDEDGEEIEITHGRFGKLLESNDPRVRRDAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYATTRGYQSAREAALSGNHIPETVYDSLLTSVNANATLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YDEAKELVLEALKPLGEEYQEILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYKDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHTIHQADQNGI
ALTADYLTETYFDINKKYYGEAMVYDEEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQSAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPGPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=42429 LIV_RS11220 WP_014093510.1 2304931..2306736(-) (pepF) [Listeria ivanovii subsp. ivanovii PAM 55]
ATGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAAAAGAGTTAACGTGGGATTTAACGACGATTTATCCAAG
TGATGAAGCATGGGAAGAAGCGTTTGTAGAATTACAAAAAATTGCAGAAGAAAGTACTAAATTTAAAGGGCGTCTAGCAG
ATAGTAGTCAAACACTATATGAAGCGCTGCAATTTCGTGATAAAGCATATGATTTAATTAGTAACTTGTATGTCTATGCT
CATTTAAAAATGGATCAAGATACAGCTAATGCAAAATATCAAGGGCTACATAGTCGGGCAGGTAGTTTAGTGACTAAGTT
GATGTCAGCATTATCTTACTATGATCCAGAAATCTTAGCAATGGATGAAACGGTTTTAAAACAGTTTGTAGAAGAGAATC
CAGACTTACAATTATATGCGCACCTTTTGGAAGAACTAAATCTTAGTCGCCCATATATTTTAAGTGAGAAGGAAGAAGCT
TTACTTGCAAATGCAGGAGAAGTTCTTGGAAGTTCATCTAATACATTTAATACGCTAAATAATGCGGACATGAAGTTCCC
AACCATTAAAGACGAAGATGGTGAAGAGATAGAAATCACACATGGCCGTTTTGGGAAATTATTAGAAAGTAATGACCCGC
GTGTGCGTAGAGATGCTTTTCTAGGTGTTTATTCTGTTTATGAAGGGCTAAAAAACACACTAGCTTCAACATTAAACGGT
CAAGTGAAAAAATCTAATTTTTATGCGACTACTCGAGGTTATCAATCAGCACGTGAAGCAGCCCTTTCTGGCAATCATAT
CCCTGAAACAGTATATGATTCGTTGCTTACGTCTGTAAATGCGAATGCAACTTTACTTCATCGTTATGTGAAGTTACGTA
AGGAGCTATTAGGGTTAGAAGAATTGCATATGTATGATCTTTATACACCGCTTTCGGATGATGTTAATTTAGAATTCACT
TATGATGAGGCAAAAGAACTTGTACTTGAAGCATTAAAGCCACTTGGAGAAGAGTATCAGGAAATCTTAAAAGAAGCTTT
TGACAGTCGTTGGATTGATGTCATGGAAAATAAAGGAAAACGAAGTGGTGCCTATTCTTCCGGCTCTTATAGTACGAATC
CTTATATTTTGTTGAATTGGCAGGATAATATTAATAATGTATACACACTTGCGCATGAACTTGGTCACAGTGTGCATAGT
TACTATACTAGAAAAAACCAGCCATTTGTATATGGTGATTACTCAATTTTCTTAGCAGAAGTAGCTTCCACTACCAATGA
AAATCTTTTGACTGATTACTTGCTTAAAAAATATAAAGATCCGAAAGTGCGTGCTTATCTACTGAATCATTATTTAGATG
GATTTAAAGGGACTGTTTTCCGTCAGACGCAGTTTGCTGAGTTTGAGCATACTATCCATCAAGCAGATCAAAATGGTATT
GCGTTAACTGCAGATTACCTAACTGAAACTTACTTTGATATTAATAAAAAGTATTATGGTGAGGCAATGGTTTATGATGA
GGAAATCGGTTATGAATGGTCTCGCATTCCACATTTCTATATGAACTATTATGTTTTCCAATATGCTACCGGCTTTTCGG
CTGCTTCAGCGCTTAGTGCAAAAATTTTGACAGAAGGGCAATCCGCTGTAACGGCATACATTGACTTTTTGAAGGCTGGG
AGTTCGGATTATCCTATCGATGTGCTTAAAAAAGCGGGTGTGGATATGGCTACTCCAGGCCCAGTAGATGATGCGTTAAA
AGTATTTGAGCAAAGACTAGATGAATTAGAAAAATTGGTAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.502

0.506

Multiple sequence alignment