Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IGW72_RS24005 Genome accession   NZ_CP062219
Coordinates   5222891..5223256 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain JT86     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5217891..5228256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGW72_RS23975 pyrR 5218513..5219025 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IGW72_RS23980 ruvX 5219137..5219571 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  IGW72_RS23985 - 5219571..5220140 (-) 570 WP_033956709.1 YqgE/AlgH family protein -
  IGW72_RS23990 - 5220189..5221082 (-) 894 WP_003162015.1 energy transducer TonB -
  IGW72_RS23995 gshB 5221229..5222182 (-) 954 WP_003100943.1 glutathione synthase -
  IGW72_RS24000 pilG 5222437..5222844 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  IGW72_RS24005 pilH 5222891..5223256 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  IGW72_RS24010 - 5223307..5223843 (+) 537 WP_033956703.1 chemotaxis protein CheW -
  IGW72_RS24015 pilJ 5223928..5225976 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  IGW72_RS24020 pilK 5226037..5226912 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=424233 IGW72_RS24005 WP_003084587.1 5222891..5223256(+) (pilH) [Pseudomonas aeruginosa strain JT86]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=424233 IGW72_RS24005 WP_003084587.1 5222891..5223256(+) (pilH) [Pseudomonas aeruginosa strain JT86]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364