Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIV_RS06900 Genome accession   NC_016011
Coordinates   1405381..1406427 (+) Length   348 a.a.
NCBI ID   WP_003719674.1    Uniprot ID   Q83TH2
Organism   Listeria ivanovii subsp. ivanovii PAM 55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1400381..1411427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIV_RS06880 (LIV_1345) ymfI 1401397..1402128 (+) 732 WP_014092774.1 elongation factor P 5-aminopentanone reductase -
  LIV_RS06885 (LIV_1346) - 1402178..1403131 (+) 954 WP_014092775.1 helix-turn-helix domain-containing protein -
  LIV_RS06890 (LIV_1347) pgsA 1403216..1403794 (+) 579 WP_014092776.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIV_RS06895 (LIV_1348) cinA 1403862..1405124 (+) 1263 WP_014092777.1 competence/damage-inducible protein A Machinery gene
  LIV_RS06900 (LIV_1349) recA 1405381..1406427 (+) 1047 WP_003719674.1 recombinase RecA Machinery gene
  LIV_RS06905 (LIV_1350) rny 1406728..1408290 (+) 1563 WP_012985597.1 ribonuclease Y -
  LIV_RS06910 (LIV_1351) - 1408404..1408901 (+) 498 WP_014092778.1 GNAT family N-acetyltransferase -
  LIV_RS06915 (LIV_1352) - 1408906..1409709 (+) 804 WP_014092779.1 TIGR00282 family metallophosphoesterase -
  LIV_RS06920 (LIV_1353) - 1409726..1410088 (+) 363 WP_014092780.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37921.97 Da        Isoelectric Point: 4.8011

>NTDB_id=42420 LIV_RS06900 WP_003719674.1 1405381..1406427(+) (recA) [Listeria ivanovii subsp. ivanovii PAM 55]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGSNKEPLAETEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=42420 LIV_RS06900 WP_003719674.1 1405381..1406427(+) (recA) [Listeria ivanovii subsp. ivanovii PAM 55]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAGCATTCAGACCAAAATATATCTACTATTTCTAGTGGCTCATTAGCATTAGATATTGCTTTAGGAGTCGGCGGAT
ATCCAAGAGGGCGTATTATTGAAGTATACGGACCCGAAAGTTCTGGTAAAACAACTGTTGCACTACATGCAATTGCAGAA
GTACAAGCACAAGGCGGAACAGCGGCATTTATCGATGCAGAACATGCACTCGATCCTGCTTATGCAAAAAATCTTGGTGT
TAATATTGATGAGTTACTTTTATCTCAACCAGATACGGGAGAACAAGCATTAGAAATCGCTGAAGCATTAGTAAGAAGTG
GCGCGGTTGATATGTTAGTTATTGACTCTGTGGCAGCACTTGTACCACGAGCGGAAATTGAAGGCGAAATGGGAGATGCG
CATGTTGGTTTGCAAGCACGCTTAATGTCACAAGCTTTACGCAAACTTTCTGGCGCTATCAATAAATCTAAAACTATCGC
AATTTTCATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGTAATCCGGAAATCACGCCTGGTGGTCGGGCGCTTA
AATTCTATTCTACTGTCCGTTTAGAAGTAAGACGTGCAGAACAATTGAAACAAGGTACGGATGTAATGGGGAACAAAACA
AAAATTAAAGTAGTAAAAAATAAAGTAGCTCCACCATTCCGTATTGCGGAAGTAGATATTATGTACGGAGAAGGTATCTC
ACGCGAAGGCGAGCTTGTTGATATGGCTGCAGAAGTAGATGTTATCAATAAGAGCGGCTCATGGTATTCTTATAAAGAAG
AACGTATCGGTCAAGGTCGTGAAAATGCTAAACAATATCTAAAAGAGCATACTGATATTCGTGACGAAATCTCCAAGCGT
GTTCGTGAAGAATATGAAATAGATGGAAGCAATAAAGAACCATTAGCAGAAACAGAAGAAACATTAAGCTTGCTTGATGA
CGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83TH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.451

94.253

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

77.299

100

0.773
  recA Streptococcus mitis SK321

66.111

100

0.684
  recA Streptococcus mitis NCTC 12261

68.513

98.563

0.675
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae strain A1552

62.202

96.552

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.202

96.552

0.601
  recA Ralstonia pseudosolanacearum GMI1000

63.804

93.678

0.598
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Acinetobacter baylyi ADP1

59.249

99.425

0.589
  recA Acinetobacter baumannii D1279779

59.767

98.563

0.589
  recA Pseudomonas stutzeri DSM 10701

60.831

96.839

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

94.54

0.586
  recA Helicobacter pylori strain NCTC11637

59.531

97.989

0.583
  recA Helicobacter pylori 26695

59.531

97.989

0.583
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.954

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment