Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSH417_RS07555 | Genome accession | NC_017739 |
| Coordinates | 1589406..1589669 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori Shi417 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1584406..1594669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH417_RS07535 (HPSH417_07615) | - | 1585352..1586464 (-) | 1113 | WP_000067670.1 | VirB8/TrbF family protein | - |
| HPSH417_RS08750 | - | 1586457..1586591 (-) | 135 | WP_000738750.1 | hypothetical protein | - |
| HPSH417_RS07545 | - | 1586593..1589158 (-) | 2566 | Protein_1467 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HPSH417_RS07550 (HPSH417_07630) | - | 1589158..1589394 (-) | 237 | WP_000806905.1 | hypothetical protein | - |
| HPSH417_RS07555 (HPSH417_07635) | comB3 | 1589406..1589669 (-) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HPSH417_RS07560 (HPSH417_07640) | comB2 | 1589679..1589969 (-) | 291 | WP_000736104.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSH417_RS07565 (HPSH417_07645) | - | 1589966..1590445 (-) | 480 | WP_000571646.1 | hypothetical protein | - |
| HPSH417_RS07570 (HPSH417_07650) | - | 1590442..1590666 (-) | 225 | WP_000188955.1 | hypothetical protein | - |
| HPSH417_RS07575 (HPSH417_07655) | - | 1590669..1591457 (-) | 789 | WP_001140587.1 | hypothetical protein | - |
| HPSH417_RS07580 (HPSH417_07660) | - | 1591512..1593416 (+) | 1905 | Protein_1474 | HsdR family type I site-specific deoxyribonuclease | - |
| HPSH417_RS07585 (HPSH417_07665) | - | 1593416..1594123 (+) | 708 | WP_000995212.1 | SprT family zinc-dependent metalloprotease | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=42420 HPSH417_RS07555 WP_001177721.1 1589406..1589669(-) (comB3) [Helicobacter pylori Shi417]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=42420 HPSH417_RS07555 WP_001177721.1 1589406..1589669(-) (comB3) [Helicobacter pylori Shi417]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |