Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIV_RS06895 Genome accession   NC_016011
Coordinates   1403862..1405124 (+) Length   420 a.a.
NCBI ID   WP_014092777.1    Uniprot ID   G2Z8D6
Organism   Listeria ivanovii subsp. ivanovii PAM 55     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1398862..1410124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIV_RS06875 (LIV_1344) yfmH 1400017..1401300 (+) 1284 WP_014092773.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LIV_RS06880 (LIV_1345) ymfI 1401397..1402128 (+) 732 WP_014092774.1 elongation factor P 5-aminopentanone reductase -
  LIV_RS06885 (LIV_1346) - 1402178..1403131 (+) 954 WP_014092775.1 helix-turn-helix domain-containing protein -
  LIV_RS06890 (LIV_1347) pgsA 1403216..1403794 (+) 579 WP_014092776.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIV_RS06895 (LIV_1348) cinA 1403862..1405124 (+) 1263 WP_014092777.1 competence/damage-inducible protein A Machinery gene
  LIV_RS06900 (LIV_1349) recA 1405381..1406427 (+) 1047 WP_003719674.1 recombinase RecA Machinery gene
  LIV_RS06905 (LIV_1350) rny 1406728..1408290 (+) 1563 WP_012985597.1 ribonuclease Y -
  LIV_RS06910 (LIV_1351) - 1408404..1408901 (+) 498 WP_014092778.1 GNAT family N-acetyltransferase -
  LIV_RS06915 (LIV_1352) - 1408906..1409709 (+) 804 WP_014092779.1 TIGR00282 family metallophosphoesterase -
  LIV_RS06920 (LIV_1353) - 1409726..1410088 (+) 363 WP_014092780.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46094.47 Da        Isoelectric Point: 5.1659

>NTDB_id=42419 LIV_RS06895 WP_014092777.1 1403862..1405124(+) (cinA) [Listeria ivanovii subsp. ivanovii PAM 55]
MANAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPERLKKVIKIAENRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVIDPFHMNKITEHFASRSRTMTENNKLQAVIIEGAIVLNNDYGFAAGMFLQQNNHTYILLPGPPSEMKPM
FSHYANPLLVEDNGAENILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVIVRITATAKTKEEAANLVNET
EQEILQRDGAFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGIVTYSAETKQSILQVSK
QIIADKGVVSSECATEMADNVRRLCNTDLGISFTGVAGPDSLEGHPAGTIWIGLSVKGYKTEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNASFSFK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=42419 LIV_RS06895 WP_014092777.1 1403862..1405124(+) (cinA) [Listeria ivanovii subsp. ivanovii PAM 55]
ATGGCAAATGCAGAAATTATTGCTGTAGGAACAGAATTATTATTAGGACAAATCGTTAATTCAAATGCCGCTTTTATTTC
ACAAGAATTAGCAGCGGACGGAATTTATGTCTATCATCATACAGTTGTTGGAGATAACCCAGAGCGTCTAAAGAAAGTGA
TAAAAATTGCTGAAAACCGCAGTGATATTTTAATCTTCACAGGTGGACTTGGACCAACTGAAGATGATATTACGAAACAA
ATTTTAGCTGAACATTTGCAGAAAAATTTAGTAATTGATCCATTTCATATGAACAAGATTACTGAACATTTTGCTTCAAG
AAGTCGTACGATGACTGAAAACAATAAATTACAAGCAGTCATTATTGAAGGGGCGATTGTTTTAAATAATGATTATGGCT
TTGCTGCAGGGATGTTTTTACAACAAAATAATCATACATACATTTTATTACCTGGACCTCCTTCTGAAATGAAACCAATG
TTTAGTCATTACGCAAACCCTTTGCTTGTAGAAGATAATGGGGCGGAAAATATTTTAGAATCTAAAATTATGCGTTTTTT
TGGTATTGGTGAATCTCAACTAGCTGCGGATTTAAATGATTTGATTGTAACACAAGTGAATCCTACTATCGCTACCTATG
CTGGGGATAATGAAGTGATTGTGCGTATTACGGCAACAGCCAAAACAAAGGAAGAAGCAGCGAATCTAGTCAATGAAACC
GAACAAGAAATTCTTCAACGTGATGGAGCTTTCTTATATGGTTACGGAGAAGTTTCTTTGCCAGAATTAGTAACGGCGAT
GTTGCTCGAGAAAAATATTACCATATCAGCTGCTGAAAGTTTTACTGCTGGTCTATTTCAAGCCGAAATTGCTCGTTTCC
CTGGAATTTCGAAAATTTTCAAAGGTGGGATAGTTACTTACAGTGCCGAAACAAAACAATCTATTTTACAAGTTTCCAAA
CAAATAATTGCAGATAAAGGTGTTGTTAGTTCGGAATGTGCTACTGAGATGGCAGATAATGTGAGACGGCTTTGCAATAC
CGATTTAGGTATTAGTTTTACAGGTGTCGCAGGACCAGACAGCTTAGAAGGTCATCCAGCAGGGACTATTTGGATTGGCT
TAAGCGTCAAAGGGTACAAAACAGAAGCCTATCAATTTGTTTATGGTCGAGATAGAAATCATAATCGCCGCCGAGCTGTA
AAACAAGGATTTCAACTAATTAAGCAGTTTTTAGACACCAATGCTTCATTTTCTTTTAAGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2Z8D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.732

97.619

0.495
  cinA Streptococcus pneumoniae TIGR4

48.694

100

0.488
  cinA Streptococcus mitis SK321

48.926

99.762

0.488
  cinA Streptococcus pneumoniae Rx1

48.456

100

0.486
  cinA Streptococcus pneumoniae R6

48.456

100

0.486
  cinA Streptococcus mitis NCTC 12261

48.687

99.762

0.486
  cinA Streptococcus pneumoniae D39

48.219

100

0.483
  cinA Streptococcus mutans UA159

48.91

98.333

0.481
  cinA Streptococcus suis isolate S10

40.194

98.333

0.395

Multiple sequence alignment