Detailed information NTG0042419

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPSH417_RS07525
• Genome accession: NC_017739
• Coordinates: 1582522..1583721 (-)
• Length: 399 a.a.
• NCBI ID: WP_001043301.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi417
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1577522..1588721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH417_RS07500 (HPSH417_07580)	-	1577617..1578135 (-)	519	WP_000760566.1	hypothetical protein	-
HPSH417_RS07505 (HPSH417_07585)	-	1578132..1579076 (-)	945	WP_000365305.1	CpaF/VirB11 family protein	-
HPSH417_RS07510 (HPSH417_07590)	-	1579081..1579356 (-)	276	WP_000883382.1	hypothetical protein	-
HPSH417_RS07515 (HPSH417_07595)	-	1579374..1580303 (-)	930	WP_000366897.1	hypothetical protein	-
HPSH417_RS07520 (HPSH417_07600)	-	1580316..1582538 (-)	2223	WP_000730444.1	hypothetical protein	-
HPSH417_RS07525 (HPSH417_07605)	comB10	1582522..1583721 (-)	1200	WP_001043301.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSH417_RS07530 (HPSH417_07610)	-	1583718..1585355 (-)	1638	WP_000198991.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPSH417_RS07535 (HPSH417_07615)	-	1585352..1586464 (-)	1113	WP_000067670.1	VirB8/TrbF family protein	-
HPSH417_RS08750	-	1586457..1586591 (-)	135	WP_000738750.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44573.21 Da
• Isoelectric Point: 10.0980

>NTDB_id=42419 HPSH417_RS07525 WP_001043301.1 1582522..1583721(-) (comB10) [Helicobacter pylori Shi417]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQTSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGSQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=42419 HPSH417_RS07525 WP_001043301.1 1582522..1583721(-) (comB10) [Helicobacter pylori Shi417]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAACAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAATAATCTAAACAAGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACACACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCTACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTGAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACAATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTGCTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGATCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCAAAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.652	99.499	0.534