Detailed information NTG0042418

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: HPSH417_RS07360
• Genome accession: NC_017739
• Coordinates: 1534218..1535657 (-)
• Length: 479 a.a.
• NCBI ID: WP_000751657.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi417
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1529218..1540657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH417_RS07335 (HPSH417_07410)	recG	1530355..1532226 (-)	1872	WP_001158389.1	ATP-dependent DNA helicase RecG	-
HPSH417_RS07340 (HPSH417_07415)	-	1532308..1532652 (+)	345	WP_000836985.1	hypothetical protein	-
HPSH417_RS07345 (HPSH417_07420)	-	1532656..1533291 (+)	636	WP_000668049.1	outer membrane protein	-
HPSH417_RS07350 (HPSH417_07425)	-	1533288..1534040 (-)	753	WP_000767498.1	exodeoxyribonuclease III	-
HPSH417_RS07360 (HPSH417_07430)	comH	1534218..1535657 (-)	1440	WP_000751657.1	hypothetical protein	Machinery gene
HPSH417_RS07370 (HPSH417_07440)	dnaA	1535878..1537245 (-)	1368	WP_000380593.1	chromosomal replication initiator protein DnaA	-
HPSH417_RS07375 (HPSH417_07445)	-	1537396..1537932 (+)	537	WP_000922939.1	purine-nucleoside phosphorylase	-
HPSH417_RS07380 (HPSH417_07450)	-	1537979..1538218 (+)	240	WP_000461843.1	DUF2443 family protein	-
HPSH417_RS07385 (HPSH417_07455)	glmS	1538219..1540012 (+)	1794	WP_000334332.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 54897.88 Da
• Isoelectric Point: 7.4338

>NTDB_id=42418 HPSH417_RS07360 WP_000751657.1 1534218..1535657(-) (comH) [Helicobacter pylori Shi417]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKELHPHQMPSLNAPIQKPQNKPTSSQQPPQNFPYPESKLGSKNLKNSLLQPL
ATSNKISPANEVKTPTNDTKPPLKHSSQDQENNLFVTPPTEKTLPNNTPNADINEHNESNENRDNAQKQAVRDPNVREFA
CGKWVYDDENLQAYRPSILKRVDENKQTATDITPCDYSNAENKSGKITTPYTKISVQKTEPLEDPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide

• Length: 1440 bp

>NTDB_id=42418 HPSH417_RS07360 WP_000751657.1 1534218..1535657(-) (comH) [Helicobacter pylori Shi417]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCCAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCTACACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAACCTCCTCAAAACTTTCCTTACCCAGAGTCCAAACTAGGCTCTAAAAACCTTAAAAACAGCCTTTTACAGCCTTTA
GCCACTTCTAATAAAATAAGCCCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
ACAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAACACAATGAAAGCAATGAGAATAGGGATAATGCGCAAAAACAAGCCGTTAGAGATCCTAATGTTAGAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAAACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCAAAAAACAGAGCCTTTAGAAGATCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCACGAAAAGACGGCACGACTAGGCAATGTTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGATGATC
AAATAGAGCCGACTTTCTATGAAACCAGCGAACTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCACAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	92.067	100	0.921