Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSH417_RS05765 Genome accession   NC_017739
Coordinates   1221713..1222762 (+) Length   349 a.a.
NCBI ID   WP_000115519.1    Uniprot ID   -
Organism   Helicobacter pylori Shi417     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216713..1227762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH417_RS05750 - 1217389..1219105 (+) 1717 Protein_1116 hypothetical protein -
  HPSH417_RS05755 (HPSH417_05835) asd 1219296..1220336 (-) 1041 WP_000860954.1 aspartate-semialdehyde dehydrogenase -
  HPSH417_RS05760 (HPSH417_05840) hisS 1220323..1221651 (-) 1329 WP_000632531.1 histidine--tRNA ligase -
  HPSH417_RS05765 (HPSH417_05845) waaF 1221713..1222762 (+) 1050 WP_000115519.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSH417_RS05770 (HPSH417_05850) - 1222956..1223228 (-) 273 WP_000744165.1 hypothetical protein -
  HPSH417_RS05775 (HPSH417_05855) fusA 1223763..1225841 (-) 2079 WP_000101892.1 elongation factor G -
  HPSH417_RS05780 (HPSH417_05860) rpsG 1225853..1226320 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPSH417_RS05785 (HPSH417_05865) rpsL 1226338..1226745 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39573.46 Da        Isoelectric Point: 9.8130

>NTDB_id=42413 HPSH417_RS05765 WP_000115519.1 1221713..1222762(+) (waaF) [Helicobacter pylori Shi417]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRICP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=42413 HPSH417_RS05765 WP_000115519.1 1221713..1222762(+) (waaF) [Helicobacter pylori Shi417]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTCATCTTAGTAGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGTCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAATTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment