Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IFO96_RS13890 Genome accession   NZ_CP062211
Coordinates   2852266..2853693 (+) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain L3Cip3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2847266..2858693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFO96_RS13850 (IFO96_13850) yeeW 2847450..2847644 (+) 195 WP_000988600.1 DUF5983 family protein -
  IFO96_RS13855 (IFO96_13855) - 2847690..2847770 (+) 81 Protein_2740 hypothetical protein -
  IFO96_RS26820 (IFO96_13860) - 2848059..2848232 (-) 174 WP_071592185.1 transposase domain-containing protein -
  IFO96_RS26825 (IFO96_13865) - 2848259..2848441 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IFO96_RS13870 (IFO96_13870) tmaR 2848542..2848871 (-) 330 WP_000450409.1 DUF496 family protein -
  IFO96_RS13875 (IFO96_13875) yeeA 2849043..2850101 (-) 1059 WP_001200891.1 FUSC family protein -
  IFO96_RS13880 (IFO96_13880) sbmC 2850299..2850772 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  IFO96_RS13885 (IFO96_13885) dacD 2850891..2852057 (-) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IFO96_RS13890 (IFO96_13890) sbcB 2852266..2853693 (+) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  IFO96_RS13895 (IFO96_13895) tsuB 2853736..2853963 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IFO96_RS13900 (IFO96_13900) tsuA 2853977..2855035 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  IFO96_RS13905 (IFO96_13905) plaP 2855214..2856572 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IFO96_RS13910 (IFO96_13910) yoeI 2856562..2856624 (-) 63 WP_010723108.1 membrane protein YoeI -
  IFO96_RS13915 (IFO96_13915) yeeY 2856839..2857768 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IFO96_RS13920 (IFO96_13920) yeeZ 2857814..2858638 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=424104 IFO96_RS13890 WP_000980582.1 2852266..2853693(+) (sbcB) [Escherichia coli strain L3Cip3]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=424104 IFO96_RS13890 WP_000980582.1 2852266..2853693(+) (sbcB) [Escherichia coli strain L3Cip3]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581