Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LIV_RS01110 Genome accession   NC_016011
Coordinates   237289..238662 (+) Length   457 a.a.
NCBI ID   WP_014091760.1    Uniprot ID   G2ZA10
Organism   Listeria ivanovii subsp. ivanovii PAM 55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232289..243662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIV_RS01090 (LIV_0199) - 232639..233097 (+) 459 WP_014091756.1 CtsR family transcriptional regulator -
  LIV_RS01095 (LIV_0200) - 233111..233629 (+) 519 WP_014091757.1 UvrB/UvrC motif-containing protein -
  LIV_RS01100 (LIV_0201) - 233626..234657 (+) 1032 WP_014091758.1 protein arginine kinase -
  LIV_RS01105 (LIV_0202) - 234677..237139 (+) 2463 WP_014091759.1 ATP-dependent Clp protease ATP-binding subunit -
  LIV_RS01110 (LIV_0203) radA 237289..238662 (+) 1374 WP_014091760.1 DNA repair protein RadA Machinery gene
  LIV_RS01115 (LIV_0204) - 238796..239869 (+) 1074 WP_014091761.1 PIN/TRAM domain-containing protein -
  LIV_RS01120 (LIV_0205) ispD 239889..240590 (+) 702 WP_014091762.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LIV_RS01125 (LIV_0206) gltX 240633..242108 (+) 1476 WP_014091763.1 glutamate--tRNA ligase -
  LIV_RS01130 (LIV_0207) - 242330..243091 (+) 762 WP_369944038.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49899.56 Da        Isoelectric Point: 7.6580

>NTDB_id=42408 LIV_RS01110 WP_014091760.1 237289..238662(+) (radA) [Listeria ivanovii subsp. ivanovii PAM 55]
MAKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEAAKATPITQIASEEEARVETRMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEIGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTKSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=42408 LIV_RS01110 WP_014091760.1 237289..238662(+) (radA) [Listeria ivanovii subsp. ivanovii PAM 55]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTATGTCAGGCATGTGGATATGAATCGCCAAAATGGATGGGGAAATGTCC
GAATTGCAACGAGTGGAATCAAATGGTGGAGGCGCTAGAACCATCTAAGAAATCACGCTCAGCTTTTAATCATACTGGGG
AAGCGGCAAAAGCAACTCCGATTACGCAGATTGCCAGCGAAGAAGAGGCTCGAGTAGAGACACGTATGCCTGAGTTAAAT
CGTGTACTTGGTGGTGGAGTTGTCCCAGGATCTATGGTACTAGTTGGTGGGGATCCAGGTATTGGTAAATCAACACTTTT
ACTTCAAGTATCAGCACAACTAACGCTGACAAATAAAAAAGTACTGTATATTTCTGGGGAGGAATCAATCAAACAAACAA
AACTTCGAGCTGAGCGATTGCAAGTTTCAGGAGATAATTTATATGTTTACGCGGAAACGAATTTAGAAGCAGTGCAAGAA
ACGATTGATTTTGTGAAACCAGATTTTGTTGTAATTGACTCTATTCAAACAGTGTATCATCCAGATGTCACCAGTGCTGC
TGGAAGCGTATCTCAAGTTCGTGAATGTACGGCGGCTTTAATGCGAATCGCTAAAATGCAAAATATCGCTATTTTTATAG
TAGGGCATGTAACAAAAGAAGGCGCAATTGCAGGACCACGTTTACTTGAACACATGGTAGATACGGTGCTCTATTTTGAG
GGAGAGCGCCACCATGCTTACCGAATTTTGCGTGCTGTGAAGAACCGTTTTGGATCAACGAATGAAATTGGTATTTTTGA
AATGCGTGATGTAGGTCTTGTTGAAGTTGCCAATCCATCGGAAGTCTTCCTAGAAGAACGTTTAGAAGGAGCATCAGGTT
CAACGGTAGTTGCATCTATGGAAGGAACACGCCCAGTACTTGTCGAAATTCAAGCCCTTGTTTCACCAACCATGTTTGGA
AATGCAAAACGAATGGCAACGGGAATTGATTATAATAAAGTATCATTGATAATGGCTGTTTTGGAAAAGAGAGTAGGATT
AATGCTACAAAATCAAGACGCTTATCTGAAAGCAGCAGGTGGAGTGAAATTGGACGAACCGGCTGTAGATTTAGCTGTGG
CTGTAAGTGTAGCATCAAGTTACCGAGATAAACCGACTAAAAGTACTGATTGCTTTATCGGCGAACTAGGTTTAACTGGA
GAAATTCGTCGAGTGGCAAGAATTGAACAACGCGTACAAGAGGCGGCAAAACTTGGATTCAAACGAATTTTCATTCCGAA
AAATAATGAAGGTACTTGGAAAATACCAAAAGATGTGCAAGTGGTTGGAGTAGAAACAATTGGGGAAGCTTTGAAGAAGG
CATTGCCAGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2ZA10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.934

99.562

0.656
  radA Streptococcus pneumoniae D39

65.934

99.562

0.656
  radA Streptococcus pneumoniae R6

65.934

99.562

0.656
  radA Streptococcus pneumoniae TIGR4

65.934

99.562

0.656
  radA Streptococcus mitis NCTC 12261

65.934

99.562

0.656
  radA Streptococcus mitis SK321

65.487

98.906

0.648

Multiple sequence alignment