Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | G4V52_RS03910 | Genome accession | NZ_CP048905 |
| Coordinates | 766862..768607 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain SRRSH205 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 731695..806736 | 766862..768607 | within | 0 |
| IS/Tn | 769294..770295 | 766862..768607 | flank | 687 |
Gene organization within MGE regions
Location: 731695..806736
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4V52_RS03735 | - | 731695..732765 (-) | 1071 | WP_010360162.1 | integrase arm-type DNA-binding domain-containing protein | - |
| G4V52_RS03740 | - | 732974..733753 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| G4V52_RS03750 | dinB | 734653..735711 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| G4V52_RS03755 | rep | 735781..737796 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| G4V52_RS03760 | aroD | 737816..738580 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| G4V52_RS03765 | recA | 738780..739826 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| G4V52_RS03770 | - | 740479..740814 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| G4V52_RS03775 | dnaX | 740895..743018 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| G4V52_RS03780 | mutL | 743113..745071 (-) | 1959 | WP_203029638.1 | DNA mismatch repair endonuclease MutL | - |
| G4V52_RS03785 | - | 745215..745400 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| G4V52_RS03790 | - | 745411..746079 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| G4V52_RS03795 | - | 746079..746792 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| G4V52_RS03800 | purE | 746840..747325 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| G4V52_RS03805 | - | 747537..748348 (-) | 812 | Protein_751 | transposase | - |
| G4V52_RS03815 | - | 748719..749084 (+) | 366 | Protein_752 | transposase | - |
| G4V52_RS03820 | - | 749247..750155 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| G4V52_RS03825 | - | 750311..750967 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| G4V52_RS03830 | - | 750964..752733 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| G4V52_RS03835 | - | 752940..753554 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| G4V52_RS03840 | - | 753717..754334 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| G4V52_RS03845 | - | 754342..755205 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| G4V52_RS03850 | - | 755218..755652 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| G4V52_RS03855 | rpe | 755798..756481 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| G4V52_RS03860 | ruvB | 756726..757757 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| G4V52_RS03865 | - | 757839..758147 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| G4V52_RS03870 | - | 758566..759798 (-) | 1233 | WP_003702731.1 | multifunctional CCA addition/repair protein | - |
| G4V52_RS03875 | - | 759877..761505 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| G4V52_RS03880 | - | 761655..762029 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| G4V52_RS03885 | - | 762078..763616 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| G4V52_RS03890 | recR | 763683..764300 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| G4V52_RS03895 | - | 764356..764634 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| G4V52_RS03900 | - | 764860..766107 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| G4V52_RS03905 | lolD | 766100..766795 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| G4V52_RS03910 | recD | 766862..768607 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| G4V52_RS03915 | - | 768679..769325 (-) | 647 | Protein_772 | class I SAM-dependent methyltransferase | - |
| G4V52_RS03920 | - | 769333..770295 (+) | 963 | WP_127466217.1 | transposase | - |
| G4V52_RS03925 | - | 770428..770883 (-) | 456 | Protein_774 | methyltransferase | - |
| G4V52_RS03930 | lon | 771135..773597 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| G4V52_RS03935 | - | 773779..774048 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| G4V52_RS03940 | - | 774224..774658 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| G4V52_RS03945 | - | 774651..775958 (-) | 1308 | WP_103195193.1 | homoserine dehydrogenase | - |
| G4V52_RS03950 | - | 776154..776525 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| G4V52_RS03955 | - | 776602..778524 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| G4V52_RS03960 | - | 778487..778906 (+) | 420 | WP_229692939.1 | DUF4124 domain-containing protein | - |
| G4V52_RS03965 | - | 778997..779509 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| G4V52_RS03970 | - | 779939..780634 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| G4V52_RS03975 | traD | 780624..782666 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| G4V52_RS03980 | mobH | 782663..785215 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| G4V52_RS03985 | - | 785212..785631 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| G4V52_RS03990 | - | 786142..786603 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| G4V52_RS03995 | - | 786573..787094 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| G4V52_RS04000 | traA | 787150..787446 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| G4V52_RS04005 | traL | 787468..787749 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| G4V52_RS04010 | - | 787746..788411 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| G4V52_RS04015 | - | 788413..789147 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| G4V52_RS04020 | - | 789149..790462 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| G4V52_RS04025 | - | 790472..791191 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| G4V52_RS04030 | - | 791188..791769 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| G4V52_RS04035 | traC | 791779..794355 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| G4V52_RS04040 | - | 794383..794931 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| G4V52_RS04045 | - | 794931..795476 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| G4V52_RS04050 | - | 795485..796141 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| G4V52_RS04055 | - | 796138..797256 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| G4V52_RS12095 | - | 797283..797456 (-) | 174 | WP_228369789.1 | hypothetical protein | - |
| G4V52_RS12100 | trbC | 797541..798023 (+) | 483 | WP_228369788.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| G4V52_RS04065 | - | 798020..799264 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| G4V52_RS04070 | traN | 799303..800844 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| G4V52_RS04075 | - | 800831..801256 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| G4V52_RS04080 | - | 801268..802044 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| G4V52_RS04085 | - | 802216..803727 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| G4V52_RS04090 | - | 803734..806736 (+) | 3003 | Protein_808 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=424000 G4V52_RS03910 WP_003688652.1 766862..768607(+) (recD) [Neisseria gonorrhoeae strain SRRSH205]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=424000 G4V52_RS03910 WP_003688652.1 766862..768607(+) (recD) [Neisseria gonorrhoeae strain SRRSH205]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |