Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   G4V53_RS00485 Genome accession   NZ_CP048902
Coordinates   106370..106915 (-) Length   181 a.a.
NCBI ID   WP_203004366.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH207     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101370..111915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V53_RS00475 - 102376..102888 (-) 513 WP_003687349.1 shikimate kinase -
  G4V53_RS00480 pilQ 104156..106351 (-) 2196 WP_047918359.1 type IV pilus secretin PilQ Machinery gene
  G4V53_RS00485 pilP 106370..106915 (-) 546 WP_203004366.1 pilus assembly protein PilP Machinery gene
  G4V53_RS00490 pilO 106933..107580 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  G4V53_RS00495 pilN 107581..108180 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  G4V53_RS00500 - 108183..109298 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  G4V53_RS00505 - 109450..111846 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20110.67 Da        Isoelectric Point: 4.7529

>NTDB_id=423932 G4V53_RS00485 WP_203004366.1 106370..106915(-) (pilP) [Neisseria gonorrhoeae strain SRRSH207]
MKHYALLISFLALSACSQNSEDLNEWMAQTRREAKAEIIPFQAPTLLVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=423932 G4V53_RS00485 WP_203004366.1 106370..106915(-) (pilP) [Neisseria gonorrhoeae strain SRRSH207]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAATTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCTGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.79

100

0.978