Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   G4V50_RS00490 Genome accession   NZ_CP048899
Coordinates   107333..107932 (-) Length   199 a.a.
NCBI ID   WP_047926976.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102333..112932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V50_RS00475 pilQ 103908..106103 (-) 2196 WP_047918359.1 type IV pilus secretin PilQ Machinery gene
  G4V50_RS00480 pilP 106122..106667 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  G4V50_RS00485 pilO 106685..107332 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  G4V50_RS00490 pilN 107333..107932 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  G4V50_RS00495 - 107935..109050 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  G4V50_RS00500 - 109202..111598 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  G4V50_RS00505 yihA 111719..112348 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22283.64 Da        Isoelectric Point: 9.7317

>NTDB_id=423888 G4V50_RS00490 WP_047926976.1 107333..107932(-) (pilN) [Neisseria gonorrhoeae strain SRRSH214]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGVVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=423888 G4V50_RS00490 WP_047926976.1 107333..107932(-) (pilN) [Neisseria gonorrhoeae strain SRRSH214]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGTCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975