Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IEM32_RS19310 Genome accession   NZ_CP062160
Coordinates   3853043..3854470 (+) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli strain 20R2R     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3848043..3859470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEM32_RS19270 (IEM32_19270) yeeW 3848226..3848420 (+) 195 WP_000988600.1 DUF5983 family protein -
  IEM32_RS19275 (IEM32_19275) - 3848466..3848546 (+) 81 Protein_3815 hypothetical protein -
  IEM32_RS28160 (IEM32_19280) - 3848835..3848942 (-) 108 WP_074147515.1 transposase domain-containing protein -
  IEM32_RS28490 - 3848894..3849217 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  IEM32_RS19290 (IEM32_19290) tmaR 3849318..3849647 (-) 330 WP_000450409.1 DUF496 family protein -
  IEM32_RS19295 (IEM32_19295) yeeA 3849819..3850877 (-) 1059 WP_001202488.1 FUSC family protein -
  IEM32_RS19300 (IEM32_19300) sbmC 3851076..3851549 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IEM32_RS19305 (IEM32_19305) dacD 3851668..3852834 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IEM32_RS19310 (IEM32_19310) sbcB 3853043..3854470 (+) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  IEM32_RS19315 (IEM32_19315) tsuB 3854513..3854740 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IEM32_RS19320 (IEM32_19320) tsuA 3854754..3855812 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  IEM32_RS19325 (IEM32_19325) plaP 3855991..3857349 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IEM32_RS19330 (IEM32_19330) yoeI 3857339..3857401 (-) 63 WP_010723108.1 membrane protein YoeI -
  IEM32_RS19335 (IEM32_19335) yeeY 3857616..3858545 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  IEM32_RS19340 (IEM32_19340) yeeZ 3858591..3859415 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=423877 IEM32_RS19310 WP_000980540.1 3853043..3854470(+) (sbcB) [Escherichia coli strain 20R2R]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=423877 IEM32_RS19310 WP_000980540.1 3853043..3854470(+) (sbcB) [Escherichia coli strain 20R2R]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581