Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   G4V54_RS00480 Genome accession   NZ_CP048896
Coordinates   106168..106713 (-) Length   181 a.a.
NCBI ID   WP_003692554.1    Uniprot ID   Q5FAD1
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101168..111713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS00470 - 102174..102686 (-) 513 WP_003687349.1 shikimate kinase -
  G4V54_RS00475 pilQ 103954..106149 (-) 2196 WP_047918359.1 type IV pilus secretin PilQ Machinery gene
  G4V54_RS00480 pilP 106168..106713 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  G4V54_RS00485 pilO 106731..107378 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  G4V54_RS00490 pilN 107379..107978 (-) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  G4V54_RS00495 - 107981..109096 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  G4V54_RS00500 - 109248..111644 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20094.62 Da        Isoelectric Point: 4.7529

>NTDB_id=423841 G4V54_RS00480 WP_003692554.1 106168..106713(-) (pilP) [Neisseria gonorrhoeae strain SRRSH229]
MKHYALLISFLALSACSQNSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=423841 G4V54_RS00480 WP_003692554.1 106168..106713(-) (pilP) [Neisseria gonorrhoeae strain SRRSH229]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAATTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5FAD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983