Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | G4V55_RS03895 | Genome accession | NZ_CP048893 |
| Coordinates | 766154..767899 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain SRRSH240 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 730982..806028 | 766154..767899 | within | 0 |
| IS/Tn | 768586..769587 | 766154..767899 | flank | 687 |
Gene organization within MGE regions
Location: 730982..806028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4V55_RS03730 | - | 730982..732052 (-) | 1071 | WP_010360162.1 | integrase arm-type DNA-binding domain-containing protein | - |
| G4V55_RS03735 | - | 732261..733040 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| G4V55_RS11890 | - | 733632..733841 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| G4V55_RS03740 | dinB | 733940..734998 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| G4V55_RS03745 | rep | 735068..737083 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| G4V55_RS03750 | aroD | 737103..737867 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| G4V55_RS03755 | recA | 738067..739113 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| G4V55_RS03760 | - | 739766..740101 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| G4V55_RS03765 | dnaX | 740182..742305 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| G4V55_RS03770 | mutL | 742400..744364 (-) | 1965 | WP_047926984.1 | DNA mismatch repair endonuclease MutL | - |
| G4V55_RS03775 | - | 744508..744693 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| G4V55_RS03780 | - | 744704..745372 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| G4V55_RS03785 | - | 745372..746085 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| G4V55_RS03790 | purE | 746133..746618 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| G4V55_RS03795 | - | 746830..747640 (-) | 811 | Protein_754 | transposase | - |
| G4V55_RS03800 | - | 748011..748376 (+) | 366 | Protein_755 | transposase | - |
| G4V55_RS03805 | - | 748539..749447 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| G4V55_RS03810 | - | 749603..750259 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| G4V55_RS03815 | - | 750256..752025 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| G4V55_RS03820 | - | 752232..752846 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| G4V55_RS03825 | - | 753009..753626 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| G4V55_RS03830 | - | 753634..754497 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| G4V55_RS03835 | - | 754510..754944 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| G4V55_RS03840 | rpe | 755090..755773 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| G4V55_RS03845 | ruvB | 756018..757049 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| G4V55_RS03850 | - | 757131..757439 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| G4V55_RS03855 | - | 757858..759090 (-) | 1233 | WP_003702731.1 | multifunctional CCA addition/repair protein | - |
| G4V55_RS03860 | - | 759169..760797 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| G4V55_RS03865 | - | 760947..761321 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| G4V55_RS03870 | - | 761370..762908 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| G4V55_RS03875 | recR | 762975..763592 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| G4V55_RS03880 | - | 763648..763926 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| G4V55_RS03885 | - | 764152..765399 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| G4V55_RS03890 | lolD | 765392..766087 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| G4V55_RS03895 | recD | 766154..767899 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| G4V55_RS03900 | - | 767971..768617 (-) | 647 | Protein_775 | class I SAM-dependent methyltransferase | - |
| G4V55_RS03905 | - | 768625..769587 (+) | 963 | WP_050154485.1 | IS110 family transposase | - |
| G4V55_RS03910 | - | 769720..770175 (-) | 456 | Protein_777 | methyltransferase | - |
| G4V55_RS03915 | lon | 770427..772889 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| G4V55_RS03920 | - | 773071..773340 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| G4V55_RS03925 | - | 773516..773950 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| G4V55_RS03930 | - | 773943..775250 (-) | 1308 | WP_103195193.1 | homoserine dehydrogenase | - |
| G4V55_RS03935 | - | 775446..775817 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| G4V55_RS03940 | - | 775894..777816 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| G4V55_RS03945 | - | 777779..778198 (+) | 420 | WP_229692939.1 | DUF4124 domain-containing protein | - |
| G4V55_RS03950 | - | 778289..778801 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| G4V55_RS03955 | - | 779231..779926 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| G4V55_RS03960 | traD | 779916..781958 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| G4V55_RS03965 | mobH | 781955..784507 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| G4V55_RS03970 | - | 784504..784923 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| G4V55_RS03975 | - | 785434..785895 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| G4V55_RS03980 | - | 785865..786386 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| G4V55_RS03985 | traA | 786442..786738 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| G4V55_RS03990 | traL | 786760..787041 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| G4V55_RS03995 | - | 787038..787703 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| G4V55_RS04000 | - | 787705..788439 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| G4V55_RS04005 | - | 788441..789754 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| G4V55_RS04010 | - | 789764..790483 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| G4V55_RS04015 | - | 790480..791061 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| G4V55_RS04020 | traC | 791071..793647 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| G4V55_RS04025 | - | 793675..794223 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| G4V55_RS04030 | - | 794223..794768 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| G4V55_RS04035 | - | 794777..795433 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| G4V55_RS04040 | - | 795430..796548 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| G4V55_RS04045 | trbC | 796563..797315 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| G4V55_RS04050 | - | 797312..798556 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| G4V55_RS04055 | traN | 798595..800136 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| G4V55_RS04060 | - | 800123..800548 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| G4V55_RS04065 | - | 800560..801336 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| G4V55_RS04070 | - | 801508..803019 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| G4V55_RS04075 | - | 803026..806028 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=423813 G4V55_RS03895 WP_003688652.1 766154..767899(+) (recD) [Neisseria gonorrhoeae strain SRRSH240]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=423813 G4V55_RS03895 WP_003688652.1 766154..767899(+) (recD) [Neisseria gonorrhoeae strain SRRSH240]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |