Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   G4V55_RS01340 Genome accession   NZ_CP048893
Coordinates   264437..265477 (-) Length   346 a.a.
NCBI ID   WP_003687618.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH240     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 259437..270477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V55_RS01320 - 260933..261559 (-) 627 WP_003687611.1 phosphoribosylanthranilate isomerase -
  G4V55_RS01325 greB 261618..262109 (-) 492 WP_003687613.1 transcription elongation factor GreB -
  G4V55_RS01330 purF 262209..263753 (-) 1545 WP_003694871.1 amidophosphoribosyltransferase -
  G4V55_RS01335 - 263947..264444 (-) 498 WP_003687616.1 CvpA family protein -
  G4V55_RS01340 tpc 264437..265477 (-) 1041 WP_003687618.1 cell division protein FtsN Machinery gene
  G4V55_RS01345 folC 265491..266765 (-) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  G4V55_RS01350 - 266796..267236 (-) 441 WP_003687622.1 protein YgfX -
  G4V55_RS01355 - 267241..267600 (-) 360 WP_003687624.1 hypothetical protein -
  G4V55_RS01360 - 267673..268401 (-) 729 WP_010357138.1 amino acid ABC transporter ATP-binding protein -
  G4V55_RS01365 - 268443..268898 (-) 456 WP_003690747.1 hypothetical protein -
  G4V55_RS01370 - 269010..269579 (-) 570 WP_003687630.1 GTP pyrophosphokinase -
  G4V55_RS01375 rsmA 269594..270373 (-) 780 WP_010359834.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36992.15 Da        Isoelectric Point: 9.8118

>NTDB_id=423797 G4V55_RS01340 WP_003687618.1 264437..265477(-) (tpc) [Neisseria gonorrhoeae strain SRRSH240]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKVSATA
DSTDTVAVEKPKRSAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=423797 G4V55_RS01340 WP_003687618.1 264437..265477(-) (tpc) [Neisseria gonorrhoeae strain SRRSH240]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCTCTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(272-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

100

100

1