Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IHE41_RS11970 Genome accession   NZ_CP062153
Coordinates   2570025..2570882 (-) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 17-VB00214     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2565025..2575882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE41_RS11945 (IHE41_11910) pyrE 2565996..2566637 (-) 642 WP_021451733.1 orotate phosphoribosyltransferase -
  IHE41_RS11950 (IHE41_11915) rph 2566742..2567458 (-) 717 WP_005459025.1 ribonuclease PH -
  IHE41_RS11955 (IHE41_11920) - 2567673..2568539 (+) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  IHE41_RS11960 (IHE41_11925) - 2568594..2569019 (-) 426 WP_005458957.1 phosphate-starvation-inducible protein PsiE -
  IHE41_RS11965 (IHE41_11930) - 2569149..2569988 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  IHE41_RS11970 (IHE41_11935) amiE 2570025..2570882 (-) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  IHE41_RS11975 (IHE41_11940) - 2570892..2572718 (-) 1827 WP_140246656.1 extracellular solute-binding protein -
  IHE41_RS11980 (IHE41_11945) - 2572757..2573800 (-) 1044 WP_015296095.1 ABC transporter permease -
  IHE41_RS11985 (IHE41_11950) - 2573802..2574827 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=423792 IHE41_RS11970 WP_005496771.1 2570025..2570882(-) (amiE) [Vibrio parahaemolyticus strain 17-VB00214]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=423792 IHE41_RS11970 WP_005496771.1 2570025..2570882(-) (amiE) [Vibrio parahaemolyticus strain 17-VB00214]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGTGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGCTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCACACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAATTAATGAATGAACTTCAAGAAGAAACAGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361