Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NH8B_RS17075 Genome accession   NC_016002
Coordinates   3682925..3684151 (-) Length   408 a.a.
NCBI ID   WP_014088350.1    Uniprot ID   G2IZF5
Organism   Pseudogulbenkiania sp. NH8B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3677925..3689151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH8B_RS17050 (NH8B_3506) tsaE 3678654..3679145 (+) 492 WP_014088345.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NH8B_RS17055 (NH8B_3507) - 3679106..3680338 (+) 1233 WP_014088346.1 N-acetylmuramoyl-L-alanine amidase -
  NH8B_RS20570 (NH8B_3508) yacG 3680404..3680598 (-) 195 WP_014088347.1 DNA gyrase inhibitor YacG -
  NH8B_RS17060 (NH8B_3509) zapD 3680607..3681365 (-) 759 WP_040652180.1 cell division protein ZapD -
  NH8B_RS17065 (NH8B_3510) coaE 3681452..3682072 (-) 621 WP_014088348.1 dephospho-CoA kinase -
  NH8B_RS17070 (NH8B_3511) pilD 3682059..3682925 (-) 867 WP_014088349.1 A24 family peptidase Machinery gene
  NH8B_RS17075 (NH8B_3512) pilC 3682925..3684151 (-) 1227 WP_014088350.1 type II secretion system F family protein Machinery gene
  NH8B_RS17080 (NH8B_3513) pilB 3684175..3685884 (-) 1710 WP_014088351.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NH8B_RS17085 (NH8B_3514) - 3686134..3687204 (-) 1071 WP_014088352.1 porin -
  NH8B_RS17090 (NH8B_3515) - 3687582..3688991 (+) 1410 WP_014088353.1 deoxyribodipyrimidine photo-lyase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44990.29 Da        Isoelectric Point: 10.0721

>NTDB_id=42374 NH8B_RS17075 WP_014088350.1 3682925..3684151(-) (pilC) [Pseudogulbenkiania sp. NH8B]
MATLAKKLPTTAAHIWEWEGKDRAGKVVRGEMRAESEIVAKTQLRRQGITVQKLKKRKAGFGKRITDRDITLFTRQLATM
MKAGVPLLQSFDISAKGHSNPAVTKMLLEVRADVETGMSLAEAFRKRPLYFDKLFCNLIAAGETGGVLDSLLDKLATYRE
KIMAIKGKIKSAMIYPSAIIATAFIITTIIMLYVIPAFKDLFSSFGADLPAPTLLVIWLSDAFVKFWWLVFGIIFGIIFG
TMFFFKRSPKFQEQVDRLLLKLPVLGEVVQKATIARWSRTLATMFTAGVPLVEALDSVGGASGNQVYAEATKRIQAEVSI
GSSLSFAMQRTNLFPNMVMQMTAIGEESGSLDHMLDKVADFYEEEVDNAVAAMSSLMEPVIMIVLGVLIGGLVVAMYMPI
FKMGQVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=42374 NH8B_RS17075 WP_014088350.1 3682925..3684151(-) (pilC) [Pseudogulbenkiania sp. NH8B]
ATGGCTACTCTGGCAAAGAAACTGCCGACGACGGCAGCCCACATCTGGGAGTGGGAAGGCAAGGACCGTGCAGGCAAGGT
GGTGCGGGGCGAGATGCGCGCAGAGTCCGAAATCGTTGCCAAGACCCAGTTGCGGCGGCAGGGCATCACGGTCCAGAAAC
TGAAGAAGCGCAAGGCCGGCTTTGGTAAGCGCATCACTGACCGCGACATTACCCTGTTTACCCGGCAACTGGCCACCATG
ATGAAGGCCGGTGTTCCACTGCTGCAGTCCTTCGATATCTCGGCCAAGGGGCATAGCAATCCTGCCGTGACCAAGATGCT
GCTGGAAGTCCGGGCCGACGTGGAGACTGGGATGTCGCTGGCGGAGGCCTTTCGCAAGCGTCCGCTGTACTTCGACAAGC
TGTTCTGCAACCTGATCGCTGCCGGTGAAACCGGTGGTGTGCTGGATTCGCTGCTGGACAAGTTGGCGACCTACCGCGAA
AAGATCATGGCCATCAAGGGCAAGATCAAGTCGGCGATGATCTATCCTTCCGCCATTATCGCCACTGCTTTCATTATCAC
TACCATCATCATGCTGTACGTGATTCCGGCGTTCAAGGATCTGTTTTCCAGTTTTGGCGCCGATCTGCCGGCGCCGACTC
TGCTCGTGATCTGGCTGTCGGACGCCTTTGTGAAGTTCTGGTGGTTGGTCTTCGGCATTATCTTCGGCATTATTTTTGGC
ACCATGTTCTTCTTCAAACGCTCCCCCAAGTTCCAGGAGCAGGTCGACCGCTTGCTGCTCAAGCTGCCGGTGCTGGGCGA
GGTGGTGCAGAAGGCGACCATCGCGCGCTGGTCGCGCACCCTGGCTACCATGTTCACCGCCGGGGTGCCGCTGGTGGAGG
CCCTGGATTCGGTCGGCGGGGCTTCCGGCAACCAGGTTTATGCCGAGGCCACCAAGCGCATCCAGGCGGAGGTGAGCATT
GGTTCCAGCCTGAGTTTCGCCATGCAACGTACCAATCTGTTTCCCAATATGGTGATGCAGATGACGGCCATCGGTGAGGA
GTCGGGCTCGCTTGACCACATGCTCGACAAGGTGGCGGACTTCTACGAGGAAGAGGTCGATAACGCGGTGGCGGCGATGT
CCAGCTTGATGGAGCCGGTCATCATGATCGTCCTCGGGGTGCTGATTGGCGGCCTGGTGGTCGCCATGTATATGCCGATC
TTCAAGATGGGGCAGGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2IZF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

51.716

100

0.517
  pilC Pseudomonas stutzeri DSM 10701

52.393

97.304

0.51
  pilC Legionella pneumophila strain ERS1305867

52.525

97.059

0.51
  pilC Acinetobacter baumannii D1279779

50.245

100

0.502
  pilG Neisseria gonorrhoeae MS11

50.895

95.833

0.488
  pilG Neisseria meningitidis 44/76-A

50.639

95.833

0.485
  pilC Vibrio campbellii strain DS40M4

39.467

100

0.4
  pilC Vibrio cholerae strain A1552

40.302

97.304

0.392
  pilC Thermus thermophilus HB27

36.842

97.794

0.36

Multiple sequence alignment