Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPB14_RS05645 Genome accession   NC_017733
Coordinates   1185618..1186667 (+) Length   349 a.a.
NCBI ID   WP_000115463.1    Uniprot ID   -
Organism   Helicobacter pylori HUP-B14     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180618..1191667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB14_RS05630 (HPB14_05625) - 1181542..1182768 (-) 1227 WP_001121662.1 DUF874 family protein -
  HPB14_RS05635 (HPB14_05630) asd 1183201..1184241 (-) 1041 WP_000860856.1 aspartate-semialdehyde dehydrogenase -
  HPB14_RS05640 (HPB14_05635) hisS 1184228..1185556 (-) 1329 WP_000632470.1 histidine--tRNA ligase -
  HPB14_RS05645 (HPB14_05640) waaF 1185618..1186667 (+) 1050 WP_000115463.1 lipopolysaccharide heptosyltransferase II Regulator
  HPB14_RS05650 (HPB14_05645) - 1186859..1187083 (-) 225 WP_000744178.1 hypothetical protein -
  HPB14_RS05655 (HPB14_05650) - 1187301..1188290 (+) 990 WP_001187423.1 aldo/keto reductase -
  HPB14_RS05660 (HPB14_05655) fusA 1188828..1190906 (-) 2079 WP_000101867.1 elongation factor G -
  HPB14_RS05665 (HPB14_05660) rpsG 1190918..1191385 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39478.17 Da        Isoelectric Point: 9.6620

>NTDB_id=42374 HPB14_RS05645 WP_000115463.1 1185618..1186667(+) (waaF) [Helicobacter pylori HUP-B14]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKSVKNLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=42374 HPB14_RS05645 WP_000115463.1 1185618..1186667(+) (waaF) [Helicobacter pylori HUP-B14]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAGAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAACTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTGGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTAGCCGCTAGCACGAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.081

98.567

0.375

Multiple sequence alignment