Detailed information NTG0423684

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: G4O42_RS18040
• Genome accession: NZ_CP048876
• Coordinates: 3632755..3633900 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus sp. LUNF1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3627755..3638900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4O42_RS18020 (G4O42_17890)	-	3628652..3629080 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
G4O42_RS18025 (G4O42_17895)	-	3629234..3629746 (+)	513	Protein_3508	bacteriocin biosynthesis protein AlbG	-
G4O42_RS18030 (G4O42_17900)	-	3629753..3631129 (-)	1377	WP_032875890.1	YncE family protein	-
G4O42_RS18035 (G4O42_17905)	-	3631169..3632524 (-)	1356	WP_032875887.1	YncE family protein	-
G4O42_RS18040 (G4O42_17910)	rapF	3632755..3633900 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
G4O42_RS18045 (G4O42_17915)	-	3633884..3634003 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
G4O42_RS18050 (G4O42_17920)	speB	3634126..3634998 (-)	873	WP_032875884.1	agmatinase	-
G4O42_RS18055 (G4O42_17925)	speE	3635057..3635887 (-)	831	WP_003151052.1	spermidine synthase	-
G4O42_RS18060 (G4O42_17930)	-	3636087..3638159 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
G4O42_RS18065 (G4O42_17935)	-	3638184..3638617 (-)	434	Protein_3516	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=423684 G4O42_RS18040 WP_074534220.1 3632755..3633900(+) (rapF) [Bacillus sp. LUNF1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=423684 G4O42_RS18040 WP_074534220.1 3632755..3633900(+) (rapF) [Bacillus sp. LUNF1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541