Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IF561_RS05840 Genome accession   NZ_CP062150
Coordinates   1202850..1204394 (+) Length   514 a.a.
NCBI ID   WP_029842790.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197850..1209394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS05815 (IF561_05805) - 1198151..1198471 (+) 321 WP_069493178.1 STAS domain-containing protein -
  IF561_RS05820 (IF561_05810) - 1198498..1199400 (+) 903 WP_264401227.1 OmpA family protein -
  IF561_RS05825 (IF561_05815) - 1199430..1201499 (+) 2070 WP_264401332.1 SLBB domain-containing protein -
  IF561_RS05830 (IF561_05820) - 1201499..1202185 (+) 687 WP_264401228.1 CpsD/CapB family tyrosine-protein kinase -
  IF561_RS05835 (IF561_05825) - 1202198..1202578 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  IF561_RS05840 (IF561_05830) luxO 1202850..1204394 (+) 1545 WP_029842790.1 sigma-54 dependent transcriptional regulator Regulator
  IF561_RS05845 (IF561_05835) - 1204369..1205439 (+) 1071 WP_264401229.1 glycosyltransferase family 4 protein -
  IF561_RS05850 (IF561_05840) - 1205590..1206774 (+) 1185 WP_005483478.1 glycosyltransferase -
  IF561_RS05855 (IF561_05845) - 1206785..1207957 (+) 1173 WP_264401230.1 glycosyltransferase family 4 protein -
  IF561_RS05860 (IF561_05850) - 1207950..1209380 (+) 1431 WP_264401231.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57458.31 Da        Isoelectric Point: 5.8574

>NTDB_id=423673 IF561_RS05840 WP_029842790.1 1202850..1204394(+) (luxO) [Vibrio parahaemolyticus strain 19-VB00998]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAIQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=423673 IF561_RS05840 WP_029842790.1 1202850..1204394(+) (luxO) [Vibrio parahaemolyticus strain 19-VB00998]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGAAGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCAGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATAAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTTAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATACAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACGCAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

48.898

97.082

0.475