Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   G4P54_RS19350 Genome accession   NZ_CP048852
Coordinates   3675701..3676846 (+) Length   381 a.a.
NCBI ID   WP_024713859.1    Uniprot ID   A0A6H0WQK6
Organism   Bacillus tequilensis strain EA-CB0015     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3670701..3681846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS19325 (G4P54_19275) - 3670925..3672085 (+) 1161 WP_167873923.1 insulinase family protein -
  G4P54_RS19330 (G4P54_19280) - 3672090..3673373 (+) 1284 WP_167873565.1 M16 family metallopeptidase -
  G4P54_RS19335 (G4P54_19285) - 3673370..3674071 (+) 702 WP_167873566.1 bacteriocin biosynthesis protein AlbG -
  G4P54_RS19340 (G4P54_19290) - 3674077..3675471 (-) 1395 WP_167873567.1 YncE family protein -
  G4P54_RS19350 (G4P54_19295) rapF 3675701..3676846 (+) 1146 WP_024713859.1 response regulator aspartate phosphatase RapF Regulator
  G4P54_RS19355 (G4P54_19300) phrF 3676830..3676949 (+) 120 WP_024713860.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  G4P54_RS19360 (G4P54_19305) - 3677479..3678267 (+) 789 WP_167873568.1 hypothetical protein -
  G4P54_RS19365 (G4P54_19310) - 3678254..3678928 (+) 675 WP_167873569.1 hypothetical protein -
  G4P54_RS19370 (G4P54_19315) - 3678938..3679735 (+) 798 WP_240939792.1 hypothetical protein -
  G4P54_RS19375 (G4P54_19320) - 3679738..3680385 (+) 648 WP_167873571.1 ABC transporter ATP-binding protein -
  G4P54_RS19380 (G4P54_19325) - 3680378..3680938 (+) 561 WP_167873572.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45599.96 Da        Isoelectric Point: 5.2540

>NTDB_id=423599 G4P54_RS19350 WP_024713859.1 3675701..3676846(+) (rapF) [Bacillus tequilensis strain EA-CB0015]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AVAYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHAYHSKGTAYSQKAGDSIYLSEFEFLKSLYLSGPDEEAI
QRFFDFLESKMLYADLEDFALDVAKYYHERENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=423599 G4P54_RS19350 WP_024713859.1 3675701..3676846(+) (rapF) [Bacillus tequilensis strain EA-CB0015]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAAGATCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTATCTTGAACCGCTGGAAAAAATGCGGATTGAGGAACAGCCGAGA
TTGTCTGACCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTTTTCAG
AGGAATGTACGAATTGGATCAGCGGGAATACCTGTCGGCTATCAAATTTTTCAAAAAGGCCGAAAGCAAGTTGATATTCG
TGAAGGATCGGATAGAAAAGGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCGTATGAAATATACAAAGAACATGAAGCGTATAATATAAGATTGCTTCAGTGTCACTCTTT
ATTTGCTACCAATTTCTTAGACCTGAAACAATATGAGGATGCCATCTCACATTTTAAAAAAGCTTACTCTATGGCGGAAG
CTGAGAATCAGCCCCAATTAATGGGGAGAACTTTGTACAACATCGGGCTTTGCAAAAACAGCCAAAGCCAATATGAGGAT
GCCGTAGCATATTTCAAAAGAGCAATAGCTGTTTTTGAGGAATCTAATATTCTTCCTTCCCTGCCCCAAGCCTATTTTTT
AATTACACAAATACATTATAAATTAGGAAAAATGGATAAAGCACACGCATATCATAGTAAGGGAACGGCTTATTCTCAAA
AGGCCGGAGATTCAATCTATTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAAGGTTCTTTGATTTCCTCGAAAGTAAAATGCTGTATGCCGATCTTGAGGATTTCGCTCTCGATGTGGCAAAATATTA
TCATGAACGTGAAAATTTTCAAAAAGCTTCTGCTTATTTCCTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-207)

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0WQK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

96.063

100

0.961
  rapC Bacillus subtilis subsp. subtilis str. 168

57.632

99.738

0.575