Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   G4P54_RS05540 Genome accession   NZ_CP048852
Coordinates   1049409..1049987 (+) Length   192 a.a.
NCBI ID   WP_167872032.1    Uniprot ID   A0A6H0WFH2
Organism   Bacillus tequilensis strain EA-CB0015     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044409..1054987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS21615 - 1044921..1045436 (-) 516 WP_376746285.1 methyl-accepting chemotaxis protein -
  G4P54_RS21620 hemAT 1045725..1046102 (-) 378 Protein_1025 heme-based aerotactic transducer HemAT -
  G4P54_RS05525 (G4P54_05510) - 1046357..1047886 (-) 1530 WP_167872030.1 FAD-dependent oxidoreductase -
  G4P54_RS05530 (G4P54_05515) - 1047999..1048856 (+) 858 WP_167872031.1 SDR family oxidoreductase -
  G4P54_RS05535 (G4P54_05520) - 1048883..1049116 (-) 234 WP_024712927.1 IDEAL domain-containing protein -
  G4P54_RS05540 (G4P54_05525) comK 1049409..1049987 (+) 579 WP_167872032.1 competence transcription factor ComK Regulator
  G4P54_RS05545 (G4P54_05530) - 1050029..1050928 (-) 900 WP_024712929.1 SDR family oxidoreductase -
  G4P54_RS05550 (G4P54_05535) - 1051133..1051402 (+) 270 WP_024712930.1 excalibur calcium-binding domain-containing protein -
  G4P54_RS05555 (G4P54_05540) - 1051441..1052910 (-) 1470 WP_167872033.1 sodium:solute symporter family protein -
  G4P54_RS05560 (G4P54_05545) - 1052907..1053107 (-) 201 WP_024712932.1 DUF3311 domain-containing protein -
  G4P54_RS05565 (G4P54_05550) - 1053312..1053674 (-) 363 WP_167872034.1 hypothetical protein -
  G4P54_RS05570 (G4P54_05555) - 1053823..1054446 (+) 624 WP_081719735.1 TVP38/TMEM64 family protein -
  G4P54_RS05575 (G4P54_05560) lepB 1054448..1054954 (+) 507 WP_167872035.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22383.63 Da        Isoelectric Point: 6.8421

>NTDB_id=423543 G4P54_RS05540 WP_167872032.1 1049409..1049987(+) (comK) [Bacillus tequilensis strain EA-CB0015]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSEIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=423543 G4P54_RS05540 WP_167872032.1 1049409..1049987(+) (comK) [Bacillus tequilensis strain EA-CB0015]
ATGAGTCAAAAAACAGACGCACCCTTAGAATCGTATGAAGTAAACGGCGCAACAATCGCCGTGCTGCCAGAAGAAATCGA
TGGCAAAATCTGTTCCGAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCCCACAAACCGCCG
ATTATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACAGAAGTGACCTTTTCGAACGGCAAAACGATGGAGCTGC
CGATCTCCTGCAATTCGTTTGAAAACCAGGTTTACCGGACAGCGTGGCTCAGAACCAAATTCCAAGATCGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGAGA
GCTCGGGGAGCGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0WFH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974