Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   G4P54_RS00020 Genome accession   NZ_CP048852
Coordinates   3030..4142 (+) Length   370 a.a.
NCBI ID   WP_024713393.1    Uniprot ID   A0A6H0WCY6
Organism   Bacillus tequilensis strain EA-CB0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS00005 (G4P54_00005) dnaA 1..1341 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  G4P54_RS00010 (G4P54_00010) dnaN 1531..2667 (+) 1137 WP_167871455.1 DNA polymerase III subunit beta -
  G4P54_RS00015 (G4P54_00015) rlbA 2799..3014 (+) 216 WP_024713392.1 ribosome maturation protein RlbA -
  G4P54_RS00020 (G4P54_00020) recF 3030..4142 (+) 1113 WP_024713393.1 DNA replication/repair protein RecF Machinery gene
  G4P54_RS00025 (G4P54_00025) remB 4160..4405 (+) 246 WP_024713394.1 extracellular matrix regulator RemB -
  G4P54_RS00030 (G4P54_00030) gyrB 4460..6376 (+) 1917 WP_167873789.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  G4P54_RS00035 (G4P54_00035) gyrA 6587..9052 (+) 2466 WP_167871456.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42297.31 Da        Isoelectric Point: 7.3655

>NTDB_id=423526 G4P54_RS00020 WP_024713393.1 3030..4142(+) (recF) [Bacillus tequilensis strain EA-CB0015]
MYIQNLELTSYRNYDHAGLQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQYGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIDRGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=423526 G4P54_RS00020 WP_024713393.1 3030..4142(+) (recF) [Bacillus tequilensis strain EA-CB0015]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCCGGACTTCAATTTGAAAATAAAGTAAATGT
AATCATCGGAGAGAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCTCATCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAATACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGAAAAAAGGGCAAGGTTAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTCGCGCCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGCACGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTAGA
AGTTGCGGCAAAAGTCGTCGTCAAGCGCCTGCAGTTTACAGCGCAGCTCGAGAAATGGGCGCAGCCTATCCATGCGGGCA
TCTCAAGAGGGCTGGAAGAGCTGACCCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGATCGCGGTGTGACGCTGTCAGGTCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACAGCATTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATTGGAGAATACCCCATTTTACTATTGGATGATGTATTGAGT
GAACTGGATGATTATCGCCAGTCACATTTGCTTCATACGATCCAAGGCCGAGTGCAAACGTTTGTCACAACGACAAGTGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0WCY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.649

100

0.986