Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AbD4_RS20825 Genome accession   NZ_CP048849
Coordinates   441781..442641 (-) Length   286 a.a.
NCBI ID   WP_111883681.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436781..447641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS02125 (AbD4_00432) - 437672..438982 (+) 1311 WP_000753283.1 tetratricopeptide repeat protein -
  AbD4_RS02130 (AbD4_00433) - 439059..439385 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  AbD4_RS02135 (AbD4_00434) rlmB 439487..440236 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AbD4_RS02140 (AbD4_00435) - 440272..441186 (+) 915 WP_000075020.1 DMT family transporter -
  AbD4_RS02145 (AbD4_00436) coaE 441183..441779 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  AbD4_RS20825 (AbD4_00437) pilD 441781..442641 (-) 861 WP_111883681.1 prepilin peptidase Machinery gene
  AbD4_RS02155 (AbD4_00438) pilC 442641..443867 (-) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  AbD4_RS02160 (AbD4_00439) pilB 443896..445608 (-) 1713 WP_001274992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AbD4_RS02165 (AbD4_00440) tpiA 445899..446693 (+) 795 WP_000016932.1 triose-phosphate isomerase -
  AbD4_RS02170 (AbD4_00441) secG 446706..447035 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32145.53 Da        Isoelectric Point: 6.2059

>NTDB_id=423525 AbD4_RS20825 WP_111883681.1 441781..442641(-) (pilD) [Acinetobacter baumannii strain D4]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLELRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=423525 AbD4_RS20825 WP_111883681.1 441781..442641(-) (pilD) [Acinetobacter baumannii strain D4]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAGAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.252

100

0.983
  pilD Acinetobacter baumannii D1279779

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441