Detailed information NTG0423502

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AbD4_RS09000
• Genome accession: NZ_CP048849
• Coordinates: 1886797..1887498 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain D4
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1881797..1892498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AbD4_RS08965 (AbD4_01805)	kdsB	1882320..1883081 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AbD4_RS08970 (AbD4_01806)	-	1883093..1884073 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
AbD4_RS08975 (AbD4_01807)	-	1884085..1884426 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
AbD4_RS08980 (AbD4_01808)	-	1884444..1885217 (+)	774	WP_000497298.1	TatD family hydrolase	-
AbD4_RS08985 (AbD4_01809)	-	1885255..1885863 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AbD4_RS08990 (AbD4_01810)	-	1885873..1886427 (+)	555	WP_000841379.1	type II secretion system protein	-
AbD4_RS08995 (AbD4_01811)	xcpV	1886417..1886797 (+)	381	WP_000836910.1	type II secretion system minor pseudopilin GspI	Machinery gene
AbD4_RS09000 (AbD4_01812)	xcpW	1886797..1887498 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AbD4_RS09005 (AbD4_01813)	gspK	1887498..1888457 (+)	960	WP_000301481.1	type II secretion system minor pseudopilin GspK	-
AbD4_RS09010 (AbD4_01814)	-	1888687..1889283 (+)	597	WP_000908450.1	6-pyruvoyl trahydropterin synthase family protein	-
AbD4_RS09015 (AbD4_01815)	ung	1889334..1890047 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
AbD4_RS09020 (AbD4_01816)	-	1890044..1891168 (+)	1125	WP_111883676.1	enoyl-CoA hydratase/isomerase family protein	-
AbD4_RS09025 (AbD4_01817)	tadA	1891175..1891678 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
AbD4_RS09030 (AbD4_01818)	-	1891748..1892191 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=423502 AbD4_RS09000 WP_000594572.1 1886797..1887498(+) (xcpW) [Acinetobacter baumannii strain D4]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=423502 AbD4_RS09000 WP_000594572.1 1886797..1887498(+) (xcpW) [Acinetobacter baumannii strain D4]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991