Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LSA_RS05085 Genome accession   NC_015978
Coordinates   998401..1000203 (-) Length   600 a.a.
NCBI ID   WP_103434632.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis TMW 1.1304     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 993401..1005203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSA_RS05055 (LSA_10220) trmL 994002..994526 (-) 525 WP_014082279.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  LSA_RS05060 (LSA_10230) - 994657..995238 (+) 582 WP_049777614.1 copper homeostasis protein CutC -
  LSA_RS05065 (LSA_10240) - 995269..996156 (-) 888 WP_014082280.1 RluA family pseudouridine synthase -
  LSA_RS05070 (LSA_10250) - 996149..996958 (-) 810 WP_041817890.1 NAD kinase -
  LSA_RS05075 (LSA_10260) - 996933..997580 (-) 648 WP_014082282.1 GTP pyrophosphokinase family protein -
  LSA_RS05080 (LSA_10270) - 997744..998313 (+) 570 WP_014082283.1 DsbA family protein -
  LSA_RS05085 (LSA_10280) pepF 998401..1000203 (-) 1803 WP_103434632.1 oligoendopeptidase F Regulator
  LSA_RS07275 (LSA_10290) - 1000190..1001257 (-) 1068 WP_014082285.1 competence protein CoiA family protein -
  LSA_RS07280 (LSA_10300) - 1001306..1002001 (-) 696 WP_014082286.1 adaptor protein MecA -
  LSA_RS05100 (LSA_10310) - 1002013..1002756 (-) 744 WP_014082287.1 MBL fold metallo-hydrolase -
  LSA_RS05105 (LSA_10320) - 1002844..1003344 (+) 501 WP_014082288.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68832.33 Da        Isoelectric Point: 4.9509

>NTDB_id=42350 LSA_RS05085 WP_103434632.1 998401..1000203(-) (pepF) [Fructilactobacillus sanfranciscensis TMW 1.1304]
MMTVKSIPNRDQVPENLTWDLTPIFSDDQAFLAELDSVKEATKTINQLSGIMSNSADDLLNVVKKVLNLNRRYENVYVYS
HLSNDVDTSNNDAQARMEQVEALGTKLSEATAWFDPEIINLGKTKIDNFISKQPKLSEYDRLFKMILKDEGHVLSVEAEK
LLSGASNIFNAPEKIFSMMDSADFVFPEVKDDQGNLVRLSNGLYSLLLQSTNQNTRKEAFRKFYTVFNQFKHTLAATLSS
EVAVNNYQAQTHHFNSAREQAMHENEIPESVFDTLVKTVNDNLPLLHRYVSLRKKILNLSEMHMYDMYVPLAKDPDVKYT
FAESKKIMLQALQIMGPDYVKHVQEELDNRWIDVVENKGKRTGAYSSGVYDTNPYILLNWQDNLDNLYTLIHETGHSMHS
FYSSHNQPYQYGNYSIFVAEIASTTNENILTDYLLANTNDSEMKKYILSQYLEGFKGTIFRQTQFAEFENWIHEQGRLGK
SLTADVMSKKYKEINEKYYGDEIVSDPEIAIEWSRIPHFYYDFYVYQYATGFGAASTLAEKISSGNQNSIDAYLNYLKSG
SSDTPINIMKRAGVDMTNSQYLEAAFAKFSQRMDELESLI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=42350 LSA_RS05085 WP_103434632.1 998401..1000203(-) (pepF) [Fructilactobacillus sanfranciscensis TMW 1.1304]
ATTATGACAGTTAAAAGTATCCCCAATCGTGATCAGGTTCCTGAAAACTTAACCTGGGATTTAACCCCTATTTTTTCAGA
TGATCAAGCATTCCTTGCTGAGTTAGATTCTGTTAAAGAAGCGACTAAAACAATTAATCAATTATCTGGTATTATGAGCA
ATAGTGCAGATGATTTATTAAATGTAGTTAAAAAAGTTTTGAATTTAAATCGTCGTTACGAAAACGTATATGTATATTCA
CATCTTAGCAATGACGTGGATACTTCCAATAACGATGCTCAGGCTAGAATGGAACAAGTTGAAGCCCTAGGAACAAAATT
AAGTGAAGCAACAGCTTGGTTTGATCCGGAAATTATTAATCTTGGCAAAACCAAAATAGATAATTTCATTTCCAAGCAAC
CTAAATTAAGCGAATATGATCGTCTATTTAAGATGATTTTGAAAGATGAAGGTCATGTTCTAAGTGTTGAAGCTGAAAAA
TTATTGTCAGGTGCTTCTAATATTTTTAACGCGCCTGAAAAAATATTCAGTATGATGGATAGTGCTGATTTTGTTTTTCC
AGAAGTAAAAGATGATCAAGGAAACTTAGTACGCTTGTCAAACGGATTATATAGTCTCTTACTTCAATCAACCAACCAAA
ATACCAGAAAAGAAGCCTTTCGAAAGTTCTATACAGTGTTTAATCAGTTTAAACATACTTTAGCAGCAACTTTATCATCT
GAAGTTGCAGTAAATAATTATCAAGCCCAAACACATCACTTTAATAGTGCACGGGAACAAGCTATGCATGAAAATGAAAT
TCCAGAAAGCGTTTTTGATACTTTAGTTAAAACGGTAAATGACAATTTACCTTTATTGCATCGATATGTATCTTTGCGTA
AAAAGATTCTAAATTTATCTGAAATGCATATGTATGATATGTATGTGCCTCTCGCAAAAGACCCAGATGTTAAATATACG
TTTGCTGAATCAAAAAAGATTATGTTACAAGCACTTCAAATTATGGGACCAGACTATGTAAAACATGTTCAAGAAGAACT
AGACAATCGCTGGATTGATGTAGTTGAAAATAAAGGCAAACGGACTGGTGCATATTCATCTGGAGTTTATGATACCAATC
CATACATTTTGTTGAACTGGCAAGATAATCTTGATAATTTATATACTTTAATTCATGAAACTGGACATAGTATGCACAGT
TTTTATTCTAGTCATAATCAACCATATCAATATGGAAATTATTCAATTTTTGTTGCTGAAATTGCCTCGACAACTAACGA
AAATATTCTTACTGACTATTTATTAGCTAACACGAATGATTCAGAAATGAAGAAATACATTCTTAGTCAATATTTAGAAG
GTTTCAAGGGAACTATTTTCCGTCAAACACAATTTGCTGAATTTGAGAATTGGATTCACGAACAGGGAAGATTAGGAAAA
TCATTAACTGCGGATGTAATGAGTAAAAAGTACAAAGAAATTAATGAAAAATATTATGGTGATGAGATTGTTTCGGATCC
AGAAATTGCAATTGAATGGTCAAGAATTCCACATTTCTATTATGATTTTTATGTATATCAGTACGCAACTGGGTTTGGTG
CAGCTTCAACTTTAGCTGAAAAAATCAGTTCTGGTAATCAGAATTCAATTGATGCTTACTTAAATTATTTAAAATCTGGG
AGTTCAGATACACCAATTAATATTATGAAGCGTGCAGGGGTAGATATGACTAATAGTCAATATTTAGAAGCTGCATTTGC
CAAATTTTCACAACGCATGGATGAATTAGAAAGCTTAATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.667

0.495

Multiple sequence alignment