Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AbD4_RS03605 Genome accession   NZ_CP048849
Coordinates   754425..754835 (+) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain D4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 749425..759835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS03590 (AbD4_00726) - 750414..752720 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  AbD4_RS03595 (AbD4_00727) - 752765..753538 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  AbD4_RS03600 (AbD4_00728) mazG 753650..754456 (+) 807 WP_000359485.1 nucleoside triphosphate pyrophosphohydrolase -
  AbD4_RS03605 (AbD4_00729) comEA 754425..754835 (+) 411 WP_001200146.1 ComEA family DNA-binding protein Machinery gene
  AbD4_RS03610 (AbD4_00730) pcnB 754960..756423 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AbD4_RS03615 (AbD4_00731) folK 756420..756902 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AbD4_RS03620 (AbD4_00732) panB 756948..757757 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AbD4_RS03625 (AbD4_00733) panC 757761..758609 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AbD4_RS03630 (AbD4_00734) rapZ 758632..759483 (+) 852 WP_000821671.1 RNase adapter RapZ -
  AbD4_RS03635 (AbD4_00735) - 759480..759749 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=423494 AbD4_RS03605 WP_001200146.1 754425..754835(+) (comEA) [Acinetobacter baumannii strain D4]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=423494 AbD4_RS03605 WP_001200146.1 754425..754835(+) (comEA) [Acinetobacter baumannii strain D4]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412