Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IE382_RS09295 Genome accession   NZ_CP061870
Coordinates   1769671..1770246 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain FX-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764671..1775246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS09265 (IE382_09215) dapD 1764858..1765568 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IE382_RS09270 (IE382_09220) dapI 1765638..1766762 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  IE382_RS09275 (IE382_09225) ykuS 1766824..1767069 (+) 246 WP_003232382.1 YkuS family protein -
  IE382_RS09280 (IE382_09230) mscT 1767106..1767909 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  IE382_RS09285 (IE382_09235) ahpA 1768146..1768688 (+) 543 WP_041334143.1 biofilm-specific peroxidase AhpA -
  IE382_RS09290 (IE382_09240) ykuV 1768759..1769205 (+) 447 WP_014476671.1 thiol-disulfide oxidoreductase YkuV -
  IE382_RS09295 (IE382_09245) rok 1769671..1770246 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  IE382_RS09300 (IE382_09250) - 1770367..1771517 (+) 1151 WP_087614160.1 IS3 family transposase -
  IE382_RS09305 (IE382_09255) cse15 1771577..1772542 (-) 966 WP_041335771.1 spore protein Cse15 -
  IE382_RS09310 (IE382_09260) mobA 1772679..1773278 (+) 600 WP_041335768.1 molybdenum cofactor guanylyltransferase -
  IE382_RS09315 (IE382_09265) moeB 1773329..1774348 (+) 1020 WP_041335765.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=423485 IE382_RS09295 WP_003232378.1 1769671..1770246(+) (rok) [Bacillus subtilis strain FX-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=423485 IE382_RS09295 WP_003232378.1 1769671..1770246(+) (rok) [Bacillus subtilis strain FX-1]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1