Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IE382_RS08320 Genome accession   NZ_CP061870
Coordinates   1594968..1596104 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589968..1601104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS08300 (IE382_08260) uxaA 1590418..1591911 (+) 1494 WP_017697315.1 altronate dehydratase family protein -
  IE382_RS08305 (IE382_08265) yjnA 1591950..1592714 (-) 765 WP_017697316.1 sulfite exporter TauE/SafE family protein -
  IE382_RS08310 (IE382_08270) yjoA 1592939..1593403 (-) 465 WP_014479541.1 DinB family protein -
  IE382_RS08315 (IE382_08275) yjoB 1593552..1594823 (+) 1272 WP_041337590.1 ATPase YjoB -
  IE382_RS08320 (IE382_08280) rapC 1594968..1596104 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  IE382_RS08325 (IE382_08285) phrA 1596094..1596228 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  IE382_RS08330 (IE382_08290) yjpA 1596259..1596516 (-) 258 WP_041333908.1 YciI family protein -
  IE382_RS08335 (IE382_08295) xlyB 1596638..1597591 (+) 954 WP_041333906.1 N-acetylmuramoyl-L-alanine amidase -
  IE382_RS08340 (IE382_08300) yjqA 1597630..1598007 (-) 378 WP_014476529.1 PH domain-containing protein -
  IE382_RS08345 (IE382_08305) pghB 1598113..1598715 (+) 603 WP_144453044.1 poly-gamma-glutamate hydrolase family protein -
  IE382_RS08350 (IE382_08310) xpdC 1598792..1599628 (+) 837 WP_144453046.1 manganese catalase family protein -
  IE382_RS08355 (IE382_08315) xkdA 1599672..1600268 (-) 597 WP_144453048.1 ImmA/IrrE family metallo-endopeptidase -
  IE382_RS08360 (IE382_08320) xre 1600431..1600772 (-) 342 WP_017695142.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=423477 IE382_RS08320 WP_015252291.1 1594968..1596104(+) (rapC) [Bacillus subtilis strain FX-1]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=423477 IE382_RS08320 WP_015252291.1 1594968..1596104(+) (rapC) [Bacillus subtilis strain FX-1]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418