Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IE382_RS05615 Genome accession   NZ_CP061870
Coordinates   1094881..1095597 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain FX-1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089881..1100597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS05585 (IE382_05545) - 1089906..1090043 (+) 138 WP_072557053.1 hypothetical protein -
  IE382_RS05590 (IE382_05550) yflB 1090062..1090454 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  IE382_RS05595 (IE382_05555) - 1090579..1090815 (+) 237 Protein_1052 sodium:alanine symporter family protein -
  IE382_RS05600 (IE382_05560) - 1090764..1091498 (-) 735 Protein_1053 spore germination protein -
  IE382_RS05605 (IE382_05565) treP 1091692..1093104 (+) 1413 WP_041338242.1 PTS system trehalose-specific EIIBC component -
  IE382_RS05610 (IE382_05570) treC 1093175..1094860 (+) 1686 WP_041332863.1 alpha,alpha-phosphotrehalase -
  IE382_RS05615 (IE382_05575) treR 1094881..1095597 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  IE382_RS05620 (IE382_05580) hypO 1095737..1096402 (+) 666 WP_041055571.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=423452 IE382_RS05615 WP_003233679.1 1094881..1095597(+) (treR) [Bacillus subtilis strain FX-1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=423452 IE382_RS05615 WP_003233679.1 1094881..1095597(+) (treR) [Bacillus subtilis strain FX-1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCAGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416