Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IE382_RS05140 Genome accession   NZ_CP061870
Coordinates   997977..999107 (+) Length   376 a.a.
NCBI ID   WP_017695616.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 992977..1004107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS05115 (IE382_05075) - 993336..993602 (-) 267 WP_052470591.1 hypothetical protein -
  IE382_RS05120 (IE382_05080) yezA 993669..993875 (-) 207 WP_041056936.1 bacteriocin immunity protein -
  IE382_RS05125 (IE382_05085) yezG 994116..994571 (-) 456 WP_072557181.1 TIGR01741 family protein -
  IE382_RS05130 (IE382_05090) yeeF 994591..996600 (-) 2010 WP_041056939.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  IE382_RS05135 (IE382_05095) - 996812..997833 (+) 1022 Protein_960 hypothetical protein -
  IE382_RS05140 (IE382_05100) rapC 997977..999107 (+) 1131 WP_017695616.1 response regulator aspartate phosphatase RapH Regulator
  IE382_RS05145 (IE382_05105) phrH 999097..999270 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  IE382_RS05150 (IE382_05110) yeeI 999430..1000149 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IE382_RS05155 (IE382_05115) - 1000283..1000810 (+) 528 WP_017695615.1 hypothetical protein -
  IE382_RS05160 (IE382_05120) yezE 1000925..1001509 (+) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  IE382_RS05165 (IE382_05125) - 1001588..1001767 (+) 180 Protein_966 nuclear transport factor 2 family protein -
  IE382_RS05170 (IE382_05130) - 1001764..1002136 (+) 373 Protein_967 hypothetical protein -
  IE382_RS05175 (IE382_05135) cotJA 1002272..1002520 (+) 249 WP_017695614.1 spore coat-associated protein CotJA -
  IE382_RS05180 (IE382_05140) cotJB 1002504..1002767 (+) 264 WP_003219491.1 spore coat protein CotJB -
  IE382_RS05185 (IE382_05145) cotJC 1002782..1003351 (+) 570 WP_003233850.1 spore coat protein CotJC -
  IE382_RS05190 (IE382_05150) yesJ 1003476..1004018 (+) 543 WP_144459064.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.35 Da        Isoelectric Point: 5.8599

>NTDB_id=423451 IE382_RS05140 WP_017695616.1 997977..999107(+) (rapC) [Bacillus subtilis strain FX-1]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=423451 IE382_RS05140 WP_017695616.1 997977..999107(+) (rapC) [Bacillus subtilis strain FX-1]
TTGAGTCAAGCCATACCGTCTTCGCGTGTGGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAGCCTTACGGGAATCGCCCTACAGTGACA
GAACTTTTGGAAACAATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404