Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IE382_RS03845 Genome accession   NZ_CP061870
Coordinates   744364..744798 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain FX-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739364..749798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS03815 (IE382_03785) ydaD 740011..740871 (+) 861 WP_017697338.1 SDR family oxidoreductase -
  IE382_RS03820 (IE382_03790) lyxE 740887..741390 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IE382_RS03825 (IE382_03795) ydaF 741479..742030 (+) 552 WP_041337761.1 GNAT family protein -
  IE382_RS03830 (IE382_03800) ydaG 742108..742530 (+) 423 WP_095843480.1 pyridoxamine 5'-phosphate oxidase family protein -
  IE382_RS03835 (IE382_03805) amj 743035..743844 (+) 810 WP_041336819.1 lipid II flippase Amj -
  IE382_RS03840 (IE382_03810) ydzA 743889..744179 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  IE382_RS03845 (IE382_03815) lrpC 744364..744798 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IE382_RS03850 (IE382_03820) topB 744863..747046 (+) 2184 WP_041336817.1 DNA topoisomerase III -
  IE382_RS03855 (IE382_03825) - 747249..748337 (+) 1089 WP_041351794.1 hypothetical protein -
  IE382_RS03860 (IE382_03830) epsK 748318..749169 (+) 852 Protein_719 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=423446 IE382_RS03845 WP_003246585.1 744364..744798(+) (lrpC) [Bacillus subtilis strain FX-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=423446 IE382_RS03845 WP_003246585.1 744364..744798(+) (lrpC) [Bacillus subtilis strain FX-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1