Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IE382_RS01700 Genome accession   NZ_CP061870
Coordinates   319997..320227 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain FX-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 314997..325227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS01670 (IE382_01660) ridA 315161..315538 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  IE382_RS01675 (IE382_01665) spoVG 315733..316026 (+) 294 WP_003218346.1 septation regulator SpoVG -
  IE382_RS01680 (IE382_01670) glmU 316219..317589 (+) 1371 WP_242304482.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IE382_RS01685 (IE382_01675) prs 317612..318565 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  IE382_RS01690 (IE382_01680) ctc 318650..319264 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  IE382_RS01695 (IE382_01685) pth 319371..319937 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IE382_RS01700 (IE382_01690) subA/fin 319997..320227 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IE382_RS01705 (IE382_01695) mfd 320297..323830 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  IE382_RS01710 (IE382_01700) spoVT 323966..324502 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=423428 IE382_RS01700 WP_003243417.1 319997..320227(+) (subA/fin) [Bacillus subtilis strain FX-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=423428 IE382_RS01700 WP_003243417.1 319997..320227(+) (subA/fin) [Bacillus subtilis strain FX-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1