Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAMOH1_RS18510 Genome accession   NZ_CP061853
Coordinates   3816107..3816796 (-) Length   229 a.a.
NCBI ID   WP_043020878.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3811107..3821796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS18490 (BAMOH1_18490) - 3812012..3812359 (-) 348 WP_004393256.1 YxeA family protein -
  BAMOH1_RS18495 (BAMOH1_18495) yxdM 3812373..3814241 (-) 1869 WP_191389369.1 ABC transporter permease YxdM -
  BAMOH1_RS18500 (BAMOH1_18500) yxdL 3814216..3814989 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  BAMOH1_RS18505 (BAMOH1_18505) yxdK 3815133..3816110 (-) 978 WP_088056366.1 two-component system sensor histidine kinase YxdK -
  BAMOH1_RS18510 (BAMOH1_18510) braR 3816107..3816796 (-) 690 WP_043020878.1 two-component system response regulator YxdJ Regulator
  BAMOH1_RS18515 (BAMOH1_18515) iolJ 3816903..3817775 (-) 873 WP_014419287.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  BAMOH1_RS18520 (BAMOH1_18520) iolI 3817778..3818620 (-) 843 WP_191389371.1 2-keto-myo-inositol isomerase -
  BAMOH1_RS18525 (BAMOH1_18525) - 3818708..3819577 (-) 870 WP_007407833.1 sugar phosphate isomerase/epimerase family protein -
  BAMOH1_RS18530 (BAMOH1_18530) - 3819597..3820631 (-) 1035 WP_022554004.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26559.29 Da        Isoelectric Point: 4.8613

>NTDB_id=423409 BAMOH1_RS18510 WP_043020878.1 3816107..3816796(-) (braR) [Bacillus amyloliquefaciens strain MOH1-5b]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQEEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=423409 BAMOH1_RS18510 WP_043020878.1 3816107..3816796(-) (braR) [Bacillus amyloliquefaciens strain MOH1-5b]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCTGCTGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCTGCC
AGAAGCGGCGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGAGGAAAAAAGCGAGCTTTCTAAGAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397